MTHFD2P2 (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2) - Rat Genome Database

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Gene: MTHFD2P2 (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2) Homo sapiens
Analyze
Symbol: MTHFD2P2
Name: methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2
RGD ID: 10399192
HGNC Page HGNC:48860
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: MTHFD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38687,000,045 - 87,000,291 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl687,000,045 - 87,000,291 (-)EnsemblGRCh38hg38GRCh38
GRCh37687,709,763 - 87,710,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6q14.3NCBI
CHM1_1687,807,146 - 87,807,392 (-)NCBICHM1_1
T2T-CHM13v2.0688,208,758 - 88,209,004 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:127
Interacting mature miRNAs:130
Transcripts:ENST00000407725
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 3 1 3 4 1 16 1 9 4
Below cutoff 61 3 27 10 16 25 155 4 59 27 2 8

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000407725
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl687,000,045 - 87,000,291 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTHFD2P2 COSMIC
Ensembl Genes ENSG00000217169 Ensembl, ENTREZGENE
GTEx ENSG00000217169 GTEx
HGNC ID HGNC:48860 ENTREZGENE
Human Proteome Map MTHFD2P2 Human Proteome Map
NCBI Gene MTHFD2P2 ENTREZGENE