RNU6-572P (RNA, U6 small nuclear 572, pseudogene) - Rat Genome Database

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Gene: RNU6-572P (RNA, U6 small nuclear 572, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-572P
Name: RNA, U6 small nuclear 572, pseudogene
RGD ID: 10399095
HGNC Page HGNC:47535
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385139,221,758 - 139,221,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5139,221,758 - 139,221,837 (+)EnsemblGRCh38hg38GRCh38
GRCh375138,557,447 - 138,557,526 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q31.2NCBI
CHM1_15137,990,045 - 137,990,124 (+)NCBICHM1_1
T2T-CHM13v2.05139,747,835 - 139,747,914 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-572P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385139,221,758 - 139,221,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5139,221,758 - 139,221,837 (+)EnsemblGRCh38hg38GRCh38
GRCh375138,557,447 - 138,557,526 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q31.2NCBI
CHM1_15137,990,045 - 137,990,124 (+)NCBICHM1_1
T2T-CHM13v2.05139,747,835 - 139,747,914 (+)NCBIT2T-CHM13v2.0
Rnu6-572
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8249,732,289 - 49,732,394 (-)NCBIGRCr8
mRatBN7.2247,999,282 - 47,999,387 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl247,999,282 - 47,999,387 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl248,414,194 - 48,414,291 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q14NCBI
LOC119867759
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3525,757,120 - 25,757,221 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03526,179,115 - 26,179,216 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3526,179,115 - 26,179,216 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,841,935 - 25,842,036 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,897,679 - 25,897,780 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,369,690 - 27,369,791 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:95
Interacting mature miRNAs:96
Transcripts:ENST00000516724
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 6 3 3 5 2 6 3 2 1
Below cutoff 2 1 4 5 2 7 2 2 1 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5139,221,758 - 139,221,837 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-572P COSMIC
Ensembl Genes ENSG00000252533 Ensembl, ENTREZGENE
GTEx ENSG00000252533 GTEx
HGNC ID HGNC:47535 ENTREZGENE
Human Proteome Map RNU6-572P Human Proteome Map
NCBI Gene RNU6-572P ENTREZGENE