Cp (ceruloplasmin) - Rat Genome Database

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Gene: Cp (ceruloplasmin) Mus musculus
Analyze
Symbol: Cp
Name: ceruloplasmin
RGD ID: 10384
MGI Page MGI
Description: Enables copper ion binding activity and ferroxidase activity. Predicted to be involved in intracellular monoatomic cation homeostasis; iron ion transport; and response to copper ion. Predicted to act upstream of or within copper ion transport. Located in extracellular space. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system; and sensory organ. Used to study aceruloplasminemia. Human ortholog(s) of this gene implicated in aceruloplasminemia; epilepsy; and hemosiderosis. Orthologous to human CP (ceruloplasmin).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: D3Ertd555; D3Ertd555e; ferroxidase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39320,011,097 - 20,063,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl320,011,218 - 20,063,309 (+)EnsemblGRCm39 Ensembl
GRCm38319,956,933 - 20,009,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl319,957,054 - 20,009,145 (+)EnsemblGRCm38mm10GRCm38
MGSCv37319,857,054 - 19,907,609 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36320,149,330 - 20,184,741 (+)NCBIMGSCv36mm8
Celera319,946,245 - 19,996,873 (+)NCBICelera
Cytogenetic Map3A2NCBI
cM Map36.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(S)-colchicine  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3,5-trinitro-1,3,5-triazinane  (ISO)
1-naphthyl isothiocyanate  (EXP,ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
3',5'-cyclic AMP  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,9-dihydro-1H-purine-2,6,8(3H)-trione  (ISO)
acetamide  (ISO)
acrolein  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
alcohol  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP,ISO)
arsenous acid  (ISO)
bacitracin  (ISO)
Bacoside a  (ISO)
bathocuproine disulfonic acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carnosic acid  (EXP)
chlordecone  (EXP)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
ciglitazone  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
D-penicillamine  (EXP,ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
Diallyl sulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethyl maleate  (EXP)
diethyldithiocarbamic acid  (ISO)
diethylstilbestrol  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP,ISO)
diuron  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethylenediaminetetraacetic acid  (ISO)
felbamate  (ISO)
fluoranthene  (ISO)
flutamide  (ISO)
formic acid  (ISO)
fructose  (ISO)
fumonisin B1  (EXP)
furan  (ISO)
gabapentin  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
gestodene  (ISO)
glafenine  (ISO)
glyburide  (ISO)
hexachlorobenzene  (ISO)
hydrogen peroxide  (EXP,ISO)
indometacin  (ISO)
iron atom  (EXP,ISO)
iron(0)  (EXP,ISO)
isoprenaline  (EXP,ISO)
ivermectin  (ISO)
lactacystin  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lidocaine  (ISO)
lipopolysaccharide  (EXP)
lovastatin  (ISO)
lupeol  (ISO)
malonaldehyde  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylglyoxal  (ISO)
mifepristone  (ISO)
morin  (ISO)
N,N-bis(2-hydroxypropyl)nitrosamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
natamycin  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nimesulide  (ISO)
nitrites  (EXP,ISO)
nitrofen  (ISO)
nitroglycerin  (ISO)
nystatin  (EXP)
ochratoxin A  (ISO)
olanzapine  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paricalcitol  (ISO)
pentanal  (ISO)
pentetic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (EXP,ISO)
phenytoin  (ISO)
phosphane  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (EXP,ISO)
propanal  (ISO)
prostaglandin E2  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
quinolinic acid  (ISO)
rotenone  (EXP,ISO)
SB 203580  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sirolimus  (ISO)
sodium arsenite  (EXP)
sodium atom  (ISO)
sodium azide  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
streptozocin  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
tacrolimus hydrate  (ISO)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
tetrathiomolybdate(2-)  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
toluene  (ISO)
trichloroethene  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
undecane  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP,ISO)
vincaleukoblastine  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
withaferin A  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal astrocyte morphology  (IAGP)
abnormal astrocyte physiology  (IAGP)
abnormal brain iron level  (IAGP)
abnormal Bruch membrane morphology  (IAGP)
abnormal cerebellar granule layer morphology  (IAGP)
abnormal ciliary epithelium morphology  (IAGP)
abnormal fourth ventricle morphology  (IAGP)
abnormal gait  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal iron homeostasis  (IAGP)
abnormal iron level  (IAGP)
abnormal Kupffer cell morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal liver copper level  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal neuron morphology  (IAGP)
abnormal optic choroid morphology  (IAGP)
abnormal protein level  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal response to injury  (IAGP)
abnormal retina inner nuclear layer morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina pigment epithelium morphology  (IAGP)
abnormal retina pigmentation  (IAGP)
abnormal sensory capabilities/reflexes/nociception  (IEA)
abnormal sleep behavior  (IEA)
anemia  (IAGP)
decreased circulating ceruloplasmin level  (IAGP)
decreased circulating iron level  (IAGP)
decreased hemoglobin content  (IEA)
decreased mean corpuscular hemoglobin  (IEA)
decreased mean corpuscular hemoglobin concentration  (IEA)
decreased mean corpuscular volume  (IEA)
decreased motor neuron number  (IAGP)
demyelination  (IAGP)
eye inflammation  (IAGP)
hemochromatosis  (IAGP)
hypoalgesia  (IEA)
impaired coordination  (IAGP)
increased cellular sensitivity to hydrogen peroxide  (IAGP)
increased circulating ferritin level  (IAGP)
increased circulating unsaturated transferrin level  (IAGP)
increased heart weight  (IEA)
increased liver iron level  (IAGP)
increased spleen iron level  (IAGP)
microcytic anemia  (IAGP)
neurodegeneration  (IAGP)
neuron degeneration  (IAGP)
retina degeneration  (IAGP)
retina neovascularization  (IAGP)
retina photoreceptor degeneration  (IAGP)
retina pigment epithelium atrophy  (IAGP)
retina pigment epithelium hyperplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Pro- and antioxidants in the central lymph in experimental chronic toxic hepatitis. Borodin JI, etal., Bull Exp Biol Med. 2008 Nov;146(5):566-8.
2. Increased Ceruloplasmin and Fibrinogen in Type 2 Diabetes Corresponds to Decreased Anti-oxidant Activity in a Preliminary Tertiary South Indian Hospital Study. Chacko SK and Cheluvappa R, Exp Clin Endocrinol Diabetes. 2009 Oct 15.
3. Ironing out Ferroportin. Drakesmith H, etal., Cell Metab. 2015 Nov 3;22(5):777-87. doi: 10.1016/j.cmet.2015.09.006. Epub 2015 Oct 1.
4. Copper concentrations in Egyptian infants with cholestasis: A single center study. El-Koofy N, etal., Arab J Gastroenterol. 2018 Mar;19(1):21-25. doi: 10.1016/j.ajg.2018.02.010. Epub 2018 Mar 6.
5. Ceruloplasmin gene defect associated with epilepsy in EL mice. Garey CE, etal., Nat Genet 1994 Apr;6(4):426-31.
6. Efficacy of grape seed proanthocyanidins on cardioprotection during isoproterenol-induced myocardial injury in rats. Karthikeyan K, etal., J Cardiovasc Pharmacol. 2009 Feb;53(2):109-15.
7. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. Effect of fungal polysaccharides on the modulation of plasma proteins in streptozotocin-induced diabetic rats. Kim SW, etal., Proteomics. 2006 Oct;6(19):5291-302.
9. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
10. An inhibition of ceruloplasmin expression induced by cerebral ischemia in the cortex and hippocampus of rats. Li YW, etal., Neurosci Bull. 2008 Feb;24(1):13-20.
11. Diagnostic accuracy of serum ceruloplasmin in Wilson disease: determination of sensitivity and specificity by ROC curve analysis among ATP7B-genotyped subjects. Mak CM, etal., Clin Chem. 2008 Aug;54(8):1356-62. doi: 10.1373/clinchem.2008.103432. Epub 2008 Jun 12.
12. Restoration of copper metabolism and rescue of hepatic abnormalities in LEC rats, an animal model of Wilson disease, by expression of human ATP7B gene. Meng Y, etal., Biochim Biophys Acta 2004 Nov 5;1690(3):208-19.
13. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
14. MGDs mouse GO annotations MGD data from the GO Consortium
15. MGD IEA MGD IEA
16. Hyperthyroidism is associated with increased aortic oxidative DNA damage in a rat model. Moulakakis KG, etal., In Vivo. 2007 Nov-Dec;21(6):1021-6.
17. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
18. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
19. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
20. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
21. Evaluation of oxidative stress in Insulin Dependent Diabetes Mellitus (IDDM) patients. Ramakrishna V and Jailkhani R, Diagn Pathol. 2007 Jul 1;2:22.
22. Methanolic extract of Ruta graveolens L. inhibits inflammation and oxidative stress in adjuvant induced model of arthritis in rats. Ratheesh M, etal., Inflammopharmacology. 2009 Apr;17(2):100-5.
23. Mouse MP Annotation Import Pipeline RGD automated import pipeline
24. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
25. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
26. Selenium and Copper as Biomarkers for Pulmonary Arterial Hypertension in Systemic Sclerosis. Sun Q, etal., Nutrients. 2020 Jun 25;12(6):1894. doi: 10.3390/nu12061894.
27. Cellular distributions of molecules with altered expression specific to thyroid proliferative lesions developing in a rat thyroid carcinogenesis model. Woo GH, etal., Cancer Sci. 2009 Apr;100(4):617-25. Epub 2009 Feb 25.
28. Up-regulation of brain ceruloplasmin in thrombin preconditioning. Yang S, etal., Acta Neurochir Suppl. 2006;96:203-6.
29. A mutation in the ceruloplasmin gene is associated with systemic hemosiderosis in humans. Yoshida K, etal., Nat Genet. 1995 Mar;9(3):267-72.
Additional References at PubMed
PMID:178338   PMID:343622   PMID:1783381   PMID:3436225   PMID:3886485   PMID:8690795   PMID:9750190   PMID:10349636   PMID:10485908   PMID:11042159   PMID:11076861   PMID:11461924  
PMID:11707070   PMID:12151537   PMID:12393173   PMID:12477932   PMID:12743117   PMID:12946701   PMID:14681479   PMID:14739215   PMID:15354085   PMID:15365174   PMID:15528156   PMID:15634671  
PMID:16141072   PMID:16141073   PMID:16271531   PMID:16436657   PMID:16602821   PMID:16944957   PMID:16988052   PMID:16989572   PMID:17065470   PMID:17258727   PMID:17330941   PMID:17375196  
PMID:18222182   PMID:18326691   PMID:18804145   PMID:19019832   PMID:19036966   PMID:19076073   PMID:20170749   PMID:20188154   PMID:20594231   PMID:20685892   PMID:20811044   PMID:20817278  
PMID:21051716   PMID:21267068   PMID:21297615   PMID:21677750   PMID:21873635   PMID:21949858   PMID:22035068   PMID:22342521   PMID:22526561   PMID:22770994   PMID:23018271   PMID:23306200  
PMID:23341629   PMID:24006456   PMID:24121729   PMID:24194600   PMID:24509156   PMID:24615902   PMID:25301748   PMID:25788583   PMID:26091949   PMID:26303407   PMID:26506980   PMID:27626380  
PMID:27991585   PMID:28057442   PMID:28378742   PMID:28700664   PMID:29183916   PMID:29355933   PMID:29686088   PMID:29768498   PMID:29883959   PMID:30060949   PMID:30077770   PMID:30182051  
PMID:30550785   PMID:30670944   PMID:31011744   PMID:31263155   PMID:31351040   PMID:31675530   PMID:32325033   PMID:34114013   PMID:34272312   PMID:34474395   PMID:35202704   PMID:35271829  
PMID:36261001   PMID:36583241   PMID:36674661   PMID:37269227   PMID:37414952   PMID:37439255  


Genomics

Comparative Map Data
Cp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39320,011,097 - 20,063,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl320,011,218 - 20,063,309 (+)EnsemblGRCm39 Ensembl
GRCm38319,956,933 - 20,009,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl319,957,054 - 20,009,145 (+)EnsemblGRCm38mm10GRCm38
MGSCv37319,857,054 - 19,907,609 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36320,149,330 - 20,184,741 (+)NCBIMGSCv36mm8
Celera319,946,245 - 19,996,873 (+)NCBICelera
Cytogenetic Map3A2NCBI
cM Map36.1NCBI
CP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383149,162,414 - 149,221,829 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3149,162,410 - 149,221,829 (-)EnsemblGRCh38hg38GRCh38
GRCh373148,880,201 - 148,939,616 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363150,373,220 - 150,422,519 (-)NCBINCBI36Build 36hg18NCBI36
Build 343150,374,073 - 150,422,277NCBI
Celera3147,300,808 - 147,350,343 (-)NCBICelera
Cytogenetic Map3q24-q25.1NCBI
HuRef3146,251,480 - 146,311,114 (-)NCBIHuRef
CHM1_13148,843,270 - 148,902,904 (-)NCBICHM1_1
T2T-CHM13v2.03151,913,150 - 151,972,585 (-)NCBIT2T-CHM13v2.0
Cp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,368,336 - 104,427,119 (+)NCBIGRCr8
mRatBN7.22102,439,433 - 102,498,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2102,439,624 - 102,498,075 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2108,952,949 - 109,011,420 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02107,074,093 - 107,132,568 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02102,037,140 - 102,095,422 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02104,744,249 - 104,803,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2104,744,461 - 104,799,853 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02124,467,383 - 124,524,140 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42105,086,278 - 105,135,367 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12105,031,239 - 105,080,329 (+)NCBI
Celera297,809,748 - 97,868,604 (+)NCBICelera
Cytogenetic Map2q24NCBI
Cp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955448473,179 - 523,100 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955448470,063 - 522,909 (-)NCBIChiLan1.0ChiLan1.0
CP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22147,051,806 - 147,111,317 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13147,056,837 - 147,116,051 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03146,180,527 - 146,239,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13153,768,362 - 153,817,591 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3153,764,830 - 153,817,544 (-)Ensemblpanpan1.1panPan2
CP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12343,969,297 - 44,033,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2343,969,435 - 44,030,369 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2343,833,488 - 43,897,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02344,595,848 - 44,659,908 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2344,595,850 - 44,657,211 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12344,184,564 - 44,247,918 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02344,232,408 - 44,296,498 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02344,486,640 - 44,550,551 (-)NCBIUU_Cfam_GSD_1.0
Cp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560283,263,259 - 83,302,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365196,431,144 - 6,481,858 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365196,431,156 - 6,473,183 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1389,396,708 - 89,463,476 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11389,396,713 - 89,463,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21397,390,612 - 97,455,765 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q32-q33NCBI
Cp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473026,462,550 - 26,511,078 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473026,458,554 - 26,510,796 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cp
1991 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2156
Count of miRNA genes:788
Interacting mature miRNAs:1057
Transcripts:ENSMUST00000003714, ENSMUST00000091309, ENSMUST00000108325, ENSMUST00000108328, ENSMUST00000108329, ENSMUST00000125994, ENSMUST00000128615, ENSMUST00000129135, ENSMUST00000131454, ENSMUST00000131811, ENSMUST00000150264, ENSMUST00000172605, ENSMUST00000172860, ENSMUST00000173779, ENSMUST00000173848, ENSMUST00000174803
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301256Skmw1_mskeletal muscle weight 1 (mouse)Not determined3125786432Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
12798540Scvg2_msubcutaneous vessel growth QTL 2 (mouse)3744981526249645Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
12738410Lfibq2_mliver fibrosis QTL 2 (mouse)31206506020755242Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
25671383Hrsq1_mhost response to SARS QTL 1, vascular cuffing (mouse)31844095426823641Mouse

Markers in Region
AU022691  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38319,987,711 - 19,987,919UniSTSGRCm38
MGSCv37319,887,711 - 19,887,919UniSTSGRCm37
Celera319,976,901 - 19,977,109UniSTS
Cytogenetic Map3DUniSTS
cM Map3 UniSTS
Whitehead/MRC_RH3223.16UniSTS
Cp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38319,989,072 - 19,989,195UniSTSGRCm38
MGSCv37319,889,072 - 19,889,195UniSTSGRCm37
Celera319,978,262 - 19,978,385UniSTS
Cytogenetic Map3DUniSTS
cM Map955.0UniSTS
cM Map3 UniSTS
CP-000F  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38319,973,773 - 19,974,916UniSTSGRCm38
MGSCv37319,873,773 - 19,874,916UniSTSGRCm37
Celera319,962,963 - 19,964,106UniSTS
Cytogenetic Map3DUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001276248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001374677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE689746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ336396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U49430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000003714   ⟹   ENSMUSP00000003714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,233 - 20,063,309 (+)Ensembl
GRCm38.p6 Ensembl319,957,069 - 20,009,145 (+)Ensembl
RefSeq Acc Id: ENSMUST00000091309   ⟹   ENSMUSP00000088857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,218 - 20,047,302 (+)Ensembl
GRCm38.p6 Ensembl319,957,054 - 19,993,138 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108325   ⟹   ENSMUSP00000103961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,448 - 20,046,689 (+)Ensembl
GRCm38.p6 Ensembl319,957,284 - 19,992,525 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108328   ⟹   ENSMUSP00000103964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,275 - 20,061,773 (+)Ensembl
GRCm38.p6 Ensembl319,957,111 - 20,007,609 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108329   ⟹   ENSMUSP00000103965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,218 - 20,061,773 (+)Ensembl
GRCm38.p6 Ensembl319,957,054 - 20,007,609 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,028,924 - 20,034,905 (+)Ensembl
GRCm38.p6 Ensembl319,974,760 - 19,980,741 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,225 - 20,023,501 (+)Ensembl
GRCm38.p6 Ensembl319,957,061 - 19,969,337 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,041,709 - 20,043,791 (+)Ensembl
GRCm38.p6 Ensembl319,987,545 - 19,989,627 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,011,383 - 20,023,169 (+)Ensembl
GRCm38.p6 Ensembl319,957,219 - 19,969,005 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131811
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,035,592 - 20,037,651 (+)Ensembl
GRCm38.p6 Ensembl319,981,428 - 19,983,487 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,024,006 - 20,043,229 (+)Ensembl
GRCm38.p6 Ensembl319,969,842 - 19,989,065 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172605   ⟹   ENSMUSP00000134347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,034,792 - 20,041,560 (+)Ensembl
GRCm38.p6 Ensembl319,980,628 - 19,987,396 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172860   ⟹   ENSMUSP00000133374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,039,776 - 20,046,746 (+)Ensembl
GRCm38.p6 Ensembl319,985,612 - 19,992,582 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173779   ⟹   ENSMUSP00000133643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,043,316 - 20,060,522 (+)Ensembl
GRCm38.p6 Ensembl319,989,152 - 20,006,358 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173848   ⟹   ENSMUSP00000133676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,036,167 - 20,040,067 (+)Ensembl
GRCm38.p6 Ensembl319,982,003 - 19,985,903 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl320,025,049 - 20,029,217 (+)Ensembl
GRCm38.p6 Ensembl319,970,885 - 19,975,053 (+)Ensembl
RefSeq Acc Id: NM_001276248   ⟹   NP_001263177
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,063,914 (+)NCBI
GRCm38319,957,054 - 20,007,609 (+)NCBI
Celera319,946,245 - 19,999,014 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276250   ⟹   NP_001263179
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,063,914 (+)NCBI
GRCm38319,957,054 - 20,009,750 (+)NCBI
Celera319,946,245 - 19,999,014 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001374677   ⟹   NP_001361606
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,047,143 (+)NCBI
GRCm38319,957,249 - 19,992,979 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001409646   ⟹   NP_001396575
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,063,914 (+)NCBI
RefSeq Acc Id: NM_001409647   ⟹   NP_001396576
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,063,914 (+)NCBI
RefSeq Acc Id: NM_001409648   ⟹   NP_001396577
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,063,914 (+)NCBI
RefSeq Acc Id: NM_001409649   ⟹   NP_001396578
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,047,312 (+)NCBI
RefSeq Acc Id: NM_001409650   ⟹   NP_001396579
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,047,312 (+)NCBI
RefSeq Acc Id: NM_001409651   ⟹   NP_001396580
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,047,312 (+)NCBI
RefSeq Acc Id: NM_007752   ⟹   NP_031778
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,413 - 20,047,312 (+)NCBI
GRCm38319,957,054 - 19,992,998 (+)NCBI
MGSCv37319,857,054 - 19,907,609 (+)RGD
Celera319,946,245 - 19,999,014 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004941272
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,097 - 20,063,914 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941273
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39320,011,097 - 20,063,787 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001263177 (Get FASTA)   NCBI Sequence Viewer  
  NP_001263179 (Get FASTA)   NCBI Sequence Viewer  
  NP_001361606 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396575 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396576 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396577 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396578 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396579 (Get FASTA)   NCBI Sequence Viewer  
  NP_001396580 (Get FASTA)   NCBI Sequence Viewer  
  NP_031778 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB07996 (Get FASTA)   NCBI Sequence Viewer  
  AAH62957 (Get FASTA)   NCBI Sequence Viewer  
  ABC68391 (Get FASTA)   NCBI Sequence Viewer  
  BAC37984 (Get FASTA)   NCBI Sequence Viewer  
  BAC39781 (Get FASTA)   NCBI Sequence Viewer  
  EDL34883 (Get FASTA)   NCBI Sequence Viewer  
  EDL34884 (Get FASTA)   NCBI Sequence Viewer  
  EDL34885 (Get FASTA)   NCBI Sequence Viewer  
  EDL34886 (Get FASTA)   NCBI Sequence Viewer  
  EDL34887 (Get FASTA)   NCBI Sequence Viewer  
  EDL34888 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000003714
  ENSMUSP00000003714.7
  ENSMUSP00000088857
  ENSMUSP00000088857.6
  ENSMUSP00000103961
  ENSMUSP00000103961.3
  ENSMUSP00000103964
  ENSMUSP00000103964.2
  ENSMUSP00000103965
  ENSMUSP00000103965.2
  ENSMUSP00000133374.2
  ENSMUSP00000133643.2
  ENSMUSP00000133676.2
  ENSMUSP00000134347.2
GenBank Protein Q61147 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031778   ⟸   NM_007752
- Peptide Label: isoform b precursor
- UniProtKB: Q6P5C8 (UniProtKB/Swiss-Prot),   Q61147 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001263179   ⟸   NM_001276250
- Peptide Label: isoform c precursor
- UniProtKB: G3X8Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263177   ⟸   NM_001276248
- Peptide Label: isoform c precursor
- UniProtKB: G3X8Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001361606   ⟸   NM_001374677
- Peptide Label: isoform d precursor
- UniProtKB: G3X9T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000088857   ⟸   ENSMUST00000091309
RefSeq Acc Id: ENSMUSP00000133374   ⟸   ENSMUST00000172860
RefSeq Acc Id: ENSMUSP00000103961   ⟸   ENSMUST00000108325
RefSeq Acc Id: ENSMUSP00000103964   ⟸   ENSMUST00000108328
RefSeq Acc Id: ENSMUSP00000103965   ⟸   ENSMUST00000108329
RefSeq Acc Id: ENSMUSP00000134347   ⟸   ENSMUST00000172605
RefSeq Acc Id: ENSMUSP00000003714   ⟸   ENSMUST00000003714
RefSeq Acc Id: ENSMUSP00000133643   ⟸   ENSMUST00000173779
RefSeq Acc Id: ENSMUSP00000133676   ⟸   ENSMUST00000173848
RefSeq Acc Id: NP_001396575   ⟸   NM_001409646
- Peptide Label: isoform a precursor
- UniProtKB: E9PZD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396576   ⟸   NM_001409647
- Peptide Label: isoform a precursor
- UniProtKB: E9PZD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001396577   ⟸   NM_001409648
- Peptide Label: isoform e precursor
RefSeq Acc Id: NP_001396580   ⟸   NM_001409651
- Peptide Label: isoform h precursor
RefSeq Acc Id: NP_001396579   ⟸   NM_001409650
- Peptide Label: isoform g precursor
RefSeq Acc Id: NP_001396578   ⟸   NM_001409649
- Peptide Label: isoform f precursor
Protein Domains
F5/8 type A   Plastocyanin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61147-F1-model_v2 AlphaFold Q61147 1-1061 view protein structure

Promoters
RGD ID:6833594
Promoter ID:MM_KWN:33852
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver
Transcripts:ENSMUST00000108325,   ENSMUST00000108327,   NM_001042611,   NM_007752,   OTTMUST00000057278,   UC008ORY.1,   UC008OSB.1,   UC008OSC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36319,856,974 - 19,857,474 (+)MPROMDB
RGD ID:6833595
Promoter ID:MM_KWN:33853
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:UC008OSD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36319,869,676 - 19,870,176 (+)MPROMDB
RGD ID:6833593
Promoter ID:MM_KWN:33854
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000057344
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36319,874,639 - 19,875,139 (+)MPROMDB
RGD ID:6833596
Promoter ID:MM_KWN:33855
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Liver
Transcripts:OTTMUST00000057345
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36319,880,881 - 19,881,482 (+)MPROMDB
RGD ID:6833597
Promoter ID:MM_KWN:33856
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:OTTMUST00000057346
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36319,886,754 - 19,887,254 (+)MPROMDB
RGD ID:6880316
Promoter ID:EPDNEW_M3609
Type:initiation region
Name:Cp_2
Description:Mus musculus ceruloplasmin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3610  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38319,957,062 - 19,957,122EPDNEW
RGD ID:6880318
Promoter ID:EPDNEW_M3610
Type:multiple initiation site
Name:Cp_1
Description:Mus musculus ceruloplasmin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3609  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38319,957,254 - 19,957,314EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88476 AgrOrtholog
Ensembl Genes ENSMUSG00000003617 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003714 ENTREZGENE
  ENSMUST00000003714.13 UniProtKB/TrEMBL
  ENSMUST00000091309 ENTREZGENE
  ENSMUST00000091309.12 UniProtKB/Swiss-Prot
  ENSMUST00000108325 ENTREZGENE
  ENSMUST00000108325.9 UniProtKB/TrEMBL
  ENSMUST00000108328 ENTREZGENE
  ENSMUST00000108328.8 UniProtKB/TrEMBL
  ENSMUST00000108329 ENTREZGENE
  ENSMUST00000108329.8 UniProtKB/TrEMBL
  ENSMUST00000172605.2 UniProtKB/TrEMBL
  ENSMUST00000172860.2 UniProtKB/TrEMBL
  ENSMUST00000173779.2 UniProtKB/TrEMBL
  ENSMUST00000173848.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.420 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ceruloplasmin-like_CuRO_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu-oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu-oxidase_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu-oxidase_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu-oxidase_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu_oxidase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu_oxidase_Cu_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cupredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Factor_5/8-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12870 UniProtKB/Swiss-Prot
MGD MGI:88476 ENTREZGENE
NCBI Gene 12870 ENTREZGENE
PANTHER CERULOPLASMIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11709 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11709:SF504 UniProtKB/TrEMBL
Pfam Cu-oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu-oxidase_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cu-oxidase_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CP RGD
PhenoGen Cp PhenoGen
PIRSF Factors_V_VIII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MULTICOPPER_OXIDASE1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MULTICOPPER_OXIDASE2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49503 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CERU_MOUSE UniProtKB/Swiss-Prot
  E9PZD8 ENTREZGENE, UniProtKB/TrEMBL
  G3UWP5_MOUSE UniProtKB/TrEMBL
  G3UXD2_MOUSE UniProtKB/TrEMBL
  G3UXG1_MOUSE UniProtKB/TrEMBL
  G3UZ53_MOUSE UniProtKB/TrEMBL
  G3X8Q5 ENTREZGENE, UniProtKB/TrEMBL
  G3X9T8 ENTREZGENE, UniProtKB/TrEMBL
  Q2F3J4_MOUSE UniProtKB/TrEMBL
  Q61147 ENTREZGENE
  Q6P5C8 ENTREZGENE
  Q8BU82_MOUSE UniProtKB/TrEMBL
  Q8BV37_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6P5C8 UniProtKB/Swiss-Prot