Comt (catechol-O-methyltransferase) - Rat Genome Database

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Gene: Comt (catechol-O-methyltransferase) Mus musculus
Symbol: Comt
Name: catechol-O-methyltransferase
RGD ID: 10378
Description: Enables catechol O-methyltransferase activity. Acts upstream of or within cellular response to phosphate starvation and dopamine catabolic process. Located in mitochondrion. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and sensory organ. Used to study cognitive disorder and pre-eclampsia. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autoimmune disease of skin and connective tissue (multiple); bulimia nervosa; cognitive disorder (multiple); and reproductive organ cancer (multiple). Orthologous to human COMT (catechol-O-methyltransferase); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; INTERACTS WITH 1,2-dichloroethane; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: catechol O-methyltransferase; catechol-O-methyltransferase 1; Comt1; D16Wsu103; D16Wsu103e; D330014B15Rik
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391618,225,632 - 18,247,006 (-)NCBIGRCm39mm39
GRCm39 Ensembl1618,225,636 - 18,245,602 (-)Ensembl
GRCm381618,406,882 - 18,426,716 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,406,886 - 18,426,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv371618,406,975 - 18,426,809 (-)NCBIGRCm37mm9NCBIm37
MGSCv361618,321,106 - 18,340,078 (-)NCBImm8
Celera1618,980,657 - 19,001,067 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations     Click to see Annotation Detail View
Acute Pain  (ISO)
alcohol use disorder  (ISO)
amphetamine abuse  (ISO)
Animal Mammary Neoplasms  (IEP,ISO)
attention deficit hyperactivity disorder  (ISO)
autism spectrum disorder  (ISO)
autistic disorder  (ISO)
bipolar disorder  (ISO)
Brain Injuries  (ISO)
breast cancer  (ISO)
Breast Neoplasms  (ISO)
bulimia nervosa  (ISO)
Catalepsy  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
Child Behavior Disorders  (ISO)
Cocaine-Related Disorders  (ISO)
cognitive disorder  (IEA,ISO)
DiGeorge syndrome  (ISO)
dilated cardiomyopathy  (ISO)
disease of mental health  (ISO)
Drug-Induced Dyskinesia  (ISO)
endometrial cancer  (ISO)
epilepsy  (ISO)
eumycotic mycetoma  (ISO)
Experimental Autoimmune Encephalomyelitis  (IMP)
Experimental Diabetes Mellitus  (ISO)
familial hypertrophic cardiomyopathy  (ISO)
Fatigue  (ISO)
Fetal Growth Retardation  (ISO)
fibromyalgia  (ISO)
Hearing Loss, Cisplatin-Induced  (ISO)
hemorrhagic disease  (ISO)
hepatocellular carcinoma  (ISO)
Hyperalgesia  (IMP,ISO)
hypertension  (ISO)
intellectual disability  (ISO)
leiomyoma  (ISO)
Lymphatic Metastasis  (ISO)
Memory Disorders  (ISO)
Musculoskeletal Pain  (ISO)
Neck Pain  (ISO)
Neurodevelopmental Disorders  (ISO)
obesity  (ISO)
obsessive-compulsive disorder  (ISO)
ovarian cancer  (ISO)
Pain  (ISO)
panic disorder  (ISO)
Parkinsonism  (ISO)
pheochromocytoma  (ISO)
polycystic ovary syndrome  (ISO)
pre-eclampsia  (IEA)
primary immunodeficiency disease  (ISO)
prostate cancer  (ISO)
Prostatic Neoplasms  (ISO)
psoriasis  (ISO)
renal cell carcinoma  (ISO)
schizophrenia  (ISO)
Schizophrenia Spectrum and Other Psychotic Disorders  (ISO)
Temporomandibular Joint Disorders  (ISO)
uremia  (ISO)
urinary bladder cancer  (ISO)
Venous Thrombosis  (ISO)
vitiligo  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(3,4-dihydroxyphenyl)acetic acid  (ISO)
(R)-adrenaline  (ISO)
(R)-noradrenaline  (ISO)
(S)-amphetamine  (ISO)
1,2,4-trimethylbenzene  (ISO)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxy-17beta-estradiol  (ISO)
2-methoxy-17beta-estradiol  (ISO)
3',4'-dihydroxyacetophenone  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4,5,3',4',5'-Hexachlorobiphenyl  (ISO)
3,4-dihydroxyacetophenone  (ISO)
3,4-dihydroxybenzoic acid  (ISO)
3,4-dihydroxymandelic acid  (ISO)
3,4-dihydroxyphenylethyleneglycol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
3-methoxycatechol  (ISO)
3-O-methylgallic acid  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-chlorocatechol  (ISO)
4-hydroxy-17beta-estradiol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-methylcatechol  (ISO)
4-nitrocatechol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-Hydroxydopamine  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
alcohol  (EXP)
all-trans-retinoic acid  (ISO)
alpha-methyl-L-dopa  (ISO)
aminoglutethimide  (ISO)
amitraz  (ISO)
ammonium chloride  (ISO)
amphetamine  (EXP,ISO)
anthracene  (ISO)
antirheumatic drug  (ISO)
aripiprazole  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (EXP,ISO)
bathocuproine disulfonic acid  (ISO)
benserazide  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP)
calcitriol  (ISO)
captan  (EXP)
carbidopa  (ISO)
carbon nanotube  (EXP)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
catechol  (ISO)
CGP 28014  (EXP)
chlorpyrifos  (EXP,ISO)
ciguatoxin CTX1B  (EXP)
cis-caffeic acid  (ISO)
cisplatin  (ISO)
clonidine  (ISO)
clonidine (amino form)  (ISO)
clonidine (imino form)  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
corticosterone  (EXP)
coumestrol  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (EXP)
cyproconazole  (ISO)
daidzein  (ISO)
decabromodiphenyl ether  (ISO)
Deguelin  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (EXP,ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
dobutamine  (ISO)
dopamine  (EXP,ISO)
edaravone  (EXP)
endosulfan  (ISO)
enilconazole  (ISO)
entacapone  (EXP,ISO)
epoxiconazole  (ISO)
esculetin  (ISO)
estrone  (ISO)
fenbuconazole  (ISO)
fingolimod hydrochloride  (ISO)
fisetin  (ISO)
fluoranthene  (ISO)
folpet  (EXP)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
glycidol  (ISO)
guaiacol  (ISO)
hemin  (ISO)
hexachlorobenzene  (ISO)
homocysteine  (ISO)
homovanillic acid  (ISO)
hydrazine  (ISO)
hydrogen peroxide  (ISO)
ionomycin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
ketamine  (ISO)
kojic acid  (ISO)
lactacystin  (ISO)
lamivudine  (ISO)
megestrol acetate  (ISO)
melevodopa  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
Metanephrine  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
mianserin  (EXP)
modafinil  (ISO)
monosodium L-glutamate  (EXP)
morphine  (EXP,ISO)
myricetin  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
naphthalene  (ISO)
naphthalene-2,3-diol  (ISO)
naphthalenes  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
Nitecapone  (EXP)
okadaic acid  (ISO)
olanzapine  (ISO)
Oleacein  (ISO)
oxidopamine  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorobenzene  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenanthrene  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP,ISO)
potassium bromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
pyrene  (ISO)
pyrogallol  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
rac-3,4-methylenedioxy-N-ethylamphetamine  (ISO)
resveratrol  (ISO)
risperidone  (ISO)
rotenone  (ISO)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
silicon dioxide  (EXP,ISO)
simazine  (EXP,ISO)
SKF 38393  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachlorocatechol  (ISO)
tetrachloromethane  (EXP,ISO)
tolcapone  (EXP,ISO)
trans-caffeic acid  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
tropolone  (ISO)
trovafloxacin  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IEA)
abnormal blood homeostasis  (IAGP)
abnormal cognition  (IAGP)
abnormal fear-related response  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal homeostasis  (IAGP)
abnormal impulsive behavior control  (IAGP)
abnormal locomotor behavior  (IEA)
abnormal maternal decidual layer morphology  (IAGP)
abnormal placenta morphology  (IAGP)
abnormal placenta vasculature  (IAGP)
abnormal pregnancy  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal response to novel object  (IAGP)
abnormal spatial working memory  (IAGP)
abnormal spongiotrophoblast layer morphology  (IAGP)
abnormal xenobiotic pharmacokinetics  (IAGP)
albuminuria  (IAGP)
cognitive inflexibility  (IAGP)
decreased anxiety-related response  (IEA)
decreased circulating fructosamine level  (IEA)
decreased circulating serum albumin level  (IEA)
decreased prepulse inhibition  (IAGP)
decreased pulmonary respiratory rate  (IEA)
decreased startle reflex  (IAGP)
decreased thigmotaxis  (IEA)
decreased vertical activity  (IAGP)
enhanced contextual conditioning behavior  (IAGP)
enhanced cued conditioning behavior  (IAGP)
hyperactivity  (IEA)
hypertension  (IAGP)
hypoxia  (IAGP)
impaired contextual conditioning behavior  (IAGP)
impaired cued conditioning behavior  (IAGP)
increased aggression towards males  (IAGP)
increased anxiety-related response  (IAGP)
increased circulating alanine transaminase level  (IEA)
increased dopamine level  (IAGP)
increased grip strength  (IEA)
increased interferon-gamma secretion  (IAGP)
increased prepulse inhibition  (IAGP)
increased startle reflex  (IAGP)
increased uterine NK cell number  (IAGP)
increased vertical activity  (IAGP)
short gestation period  (IAGP)

References - curated
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Additional References at PubMed
PMID:8103600   PMID:8180479   PMID:8401507   PMID:8889548   PMID:9037598   PMID:9244437   PMID:9385360   PMID:9405660   PMID:9520487   PMID:9740669   PMID:10337614   PMID:10349636  
PMID:10486206   PMID:10500251   PMID:10704284   PMID:10725249   PMID:10963672   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11242111   PMID:11849292   PMID:12188925   PMID:12477932  
PMID:14610273   PMID:14614146   PMID:14681479   PMID:15716360   PMID:15778864   PMID:15782199   PMID:16109395   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17097888   PMID:17707921  
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PMID:31505254   PMID:31617665   PMID:32892421  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391618,225,632 - 18,247,006 (-)NCBIGRCm39mm39
GRCm39 Ensembl1618,225,636 - 18,245,602 (-)Ensembl
GRCm381618,406,882 - 18,426,716 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,406,886 - 18,426,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv371618,406,975 - 18,426,809 (-)NCBIGRCm37mm9NCBIm37
MGSCv361618,321,106 - 18,340,078 (-)NCBImm8
Celera1618,980,657 - 19,001,067 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.4NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl2219,941,371 - 19,969,975 (+)EnsemblGRCh38hg38GRCh38
GRCh382219,941,772 - 19,969,975 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372219,929,295 - 19,957,498 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,309,309 - 18,336,530 (+)NCBINCBI36hg18NCBI36
Build 342218,324,623 - 18,331,084NCBI
Celera223,780,539 - 3,808,699 (+)NCBI
Cytogenetic Map22q11.21NCBI
HuRef223,549,825 - 3,577,976 (+)NCBIHuRef
CHM1_12219,929,027 - 19,957,208 (+)NCBICHM1_1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.21182,568,052 - 82,587,642 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1182,568,025 - 82,587,642 (+)Ensembl
Rnor_6.01186,715,981 - 86,735,630 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,715,981 - 86,735,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,809,853 - 89,829,568 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,561,591 - 84,581,713 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11184,617,363 - 84,622,260 (+)NCBI
Celera1181,345,121 - 81,364,705 (+)NCBICelera
RH 3.4 Map11712.2RGD
Cytogenetic Map11q23NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_00495544218,130,987 - 18,137,412 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,130,282 - 18,152,153 (-)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.12218,375,434 - 18,402,387 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,375,434 - 18,402,387 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0222,704,015 - 2,731,326 (+)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.12629,359,930 - 29,381,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,360,356 - 29,366,008 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,318,554 - 29,324,118 (-)NCBI
ROS_Cfam_1.02630,763,075 - 30,783,341 (-)NCBI
UMICH_Zoey_3.12628,811,616 - 28,817,179 (-)NCBI
UNSW_CanFamBas_1.02628,436,974 - 28,442,538 (-)NCBI
UU_Cfam_GSD_1.02629,522,581 - 29,528,148 (-)NCBI
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_024405118138,870,188 - 138,906,864 (-)NCBI
SpeTri2.0NW_0049366193,847,059 - 3,883,866 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl1451,385,133 - 51,403,998 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,384,729 - 51,403,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21455,021,681 - 55,040,639 (+)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.1195,775,829 - 5,803,260 (-)NCBI
ChlSab1.1 Ensembl195,773,225 - 5,785,422 (-)Ensembl
Vero_WHO_p1.0NW_0236660851,128,529 - 1,156,766 (+)NCBI
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_004624747569,127 - 588,479 (+)NCBI

Position Markers
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371618,407,647 - 18,407,735UniSTSGRCm37
Celera1618,981,905 - 18,981,993UniSTS
Celera1618,981,099 - 18,981,187UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.2UniSTS
cM Map1611.18UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16A3UniSTS
cM Map1611.2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,414,626 - 18,415,012UniSTSGRCm38
MGSCv371618,414,719 - 18,415,105UniSTSGRCm37
Celera1618,988,977 - 18,989,363UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.21UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371618,407,637 - 18,407,887UniSTSGRCm37
Celera1618,981,895 - 18,982,145UniSTS
Celera1618,981,089 - 18,981,339UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16A3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16A3UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16A3UniSTS

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120963024Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122682710Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122702454Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16123079875Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124445989Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124445989Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128616494Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129856336Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130249113Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130996708Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16350000040000000Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16350000051600000Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16350000064800000Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16400000064800000Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16450000044700000Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16482756438827664Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16595650239956690Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16595650239956690Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16595650239956690Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16595650239956690Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16665914535200846Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16672511565669666Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16731904229406653Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16840730242407302Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16860000091100000Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined161006288144062881Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161203007246030171Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161240654246406653Mouse
15092082Igly9_mIgG glycosylation 9, GP17b (mouse)161495735920284763Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161498410348984214Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161570409149704294Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:843
Count of miRNA genes:406
Interacting mature miRNAs:447
Transcripts:ENSMUST00000000335, ENSMUST00000115609, ENSMUST00000147720, ENSMUST00000165430
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.



Nucleotide Sequences
RefSeq Transcripts NM_001111062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001111063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA250343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC003066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF076156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW908224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB946852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX237493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU324998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000335   ⟹   ENSMUSP00000000335
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,226,294 - 18,245,354 (-)Ensembl
GRCm38.p6 Ensembl1618,407,544 - 18,426,604 (-)Ensembl
RefSeq Acc Id: ENSMUST00000115609   ⟹   ENSMUSP00000111272
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,226,016 - 18,245,602 (-)Ensembl
GRCm38.p6 Ensembl1618,407,266 - 18,426,852 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147720   ⟹   ENSMUSP00000121810
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,229,513 - 18,232,244 (-)Ensembl
GRCm38.p6 Ensembl1618,410,763 - 18,413,494 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165430   ⟹   ENSMUSP00000130077
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,225,636 - 18,232,244 (-)Ensembl
GRCm38.p6 Ensembl1618,406,886 - 18,413,494 (-)Ensembl
RefSeq Acc Id: NM_001111062   ⟹   NP_001104532
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391618,225,632 - 18,245,466 (-)NCBI
GRCm381618,406,882 - 18,426,716 (-)ENTREZGENE
MGSCv371618,406,975 - 18,426,809 (-)RGD
Celera1618,980,657 - 19,001,067 (-)RGD
RefSeq Acc Id: NM_001111063   ⟹   NP_001104533
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391618,225,632 - 18,232,244 (-)NCBI
GRCm381618,406,882 - 18,413,494 (-)NCBI
MGSCv371618,406,975 - 18,426,809 (-)RGD
Celera1618,980,657 - 19,001,067 (-)RGD
RefSeq Acc Id: NM_007744   ⟹   NP_031770
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391618,225,632 - 18,245,466 (-)NCBI
GRCm381618,406,882 - 18,426,716 (-)ENTREZGENE
MGSCv371618,406,975 - 18,426,809 (-)RGD
Celera1618,980,657 - 19,001,067 (-)RGD
RefSeq Acc Id: XM_036159764   ⟹   XP_036015657
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391618,226,279 - 18,247,006 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_031770   ⟸   NM_007744
- UniProtKB: O88587 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104532   ⟸   NM_001111062
- UniProtKB: O88587 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104533   ⟸   NM_001111063
- UniProtKB: O88587 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000121810   ⟸   ENSMUST00000147720
RefSeq Acc Id: ENSMUSP00000000335   ⟸   ENSMUST00000000335
RefSeq Acc Id: ENSMUSP00000130077   ⟸   ENSMUST00000165430
RefSeq Acc Id: ENSMUSP00000111272   ⟸   ENSMUST00000115609
RefSeq Acc Id: XP_036015657   ⟸   XM_036159764
- Peptide Label: isoform X1

RGD ID:6826948
Promoter ID:MM_KWN:20388
SO ACC ID:SO:0000170
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_001111063,   OTTMUST00000064323
Mouse AssemblyChrPosition (strand)Source
MGSCv361618,413,201 - 18,413,957 (-)MPROMDB
RGD ID:8685676
Promoter ID:EPDNEW_M20869
Type:single initiation site
Description:Mus musculus catechol-O-methyltransferase , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Alternative Promoters:null; see alsoEPDNEW_M20870  
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm381618,413,460 - 18,413,520EPDNEW
RGD ID:8685678
Promoter ID:EPDNEW_M20870
Type:initiation region
Description:Mus musculus catechol-O-methyltransferase , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Alternative Promoters:null; see alsoEPDNEW_M20869  
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm381618,426,379 - 18,426,439EPDNEW
RGD ID:6826941
Promoter ID:MM_KWN:20390
SO ACC ID:SO:0000170
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   Brain,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:NM_001111062,   OTTMUST00000064320
Mouse AssemblyChrPosition (strand)Source
MGSCv361618,426,416 - 18,426,916 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88470 AgrOrtholog
Ensembl Genes ENSMUSG00000000326 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000000335 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000111272 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000121810 UniProtKB/TrEMBL
  ENSMUSP00000130077 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000335 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000115609 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000147720 UniProtKB/TrEMBL
  ENSMUST00000165430 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Catechol_O-MeTrfase_euk UniProtKB/Swiss-Prot
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_O-MeTrfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12846 UniProtKB/Swiss-Prot
Pfam Methyltransf_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Comt PhenoGen
PIRSF Catechol_O-mtfrase_euk UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COMT_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q91XH4 UniProtKB/Swiss-Prot

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Comt  catechol-O-methyltransferase  Comt1  catechol-O-methyltransferase 1  Symbol and/or name change 5135510 APPROVED