Ska2 (spindle and kinetochore associated complex subunit 2) - Rat Genome Database

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Gene: Ska2 (spindle and kinetochore associated complex subunit 2) Chinchilla lanigera
Analyze
Symbol: Ska2
Name: spindle and kinetochore associated complex subunit 2
RGD ID: 10317829
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); mulibrey nanism (ortholog); FOUND IN kinetochore (ortholog); meiotic spindle (ortholog); outer kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spindle and kinetochore-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554513,839,978 - 3,862,200 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Ska2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554513,839,978 - 3,862,200 (+)NCBIChiLan1.0ChiLan1.0
SKA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,109,857 - 59,155,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1759,109,857 - 59,155,260 (-)EnsemblGRCh38hg38GRCh38
GRCh371757,187,218 - 57,232,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361754,542,090 - 54,587,582 (-)NCBINCBI36Build 36hg18NCBI36
Build 341754,543,742 - 54,587,343NCBI
Celera1753,649,948 - 53,695,816 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1752,547,893 - 52,593,823 (-)NCBIHuRef
CHM1_11757,252,805 - 57,298,295 (-)NCBICHM1_1
T2T-CHM13v2.01759,977,953 - 60,023,284 (-)NCBIT2T-CHM13v2.0
Ska2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,000,087 - 87,013,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,000,060 - 87,015,461 (+)EnsemblGRCm39 Ensembl
GRCm381187,109,261 - 87,122,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,109,234 - 87,124,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371186,922,763 - 86,936,476 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,925,456 - 86,939,169 (+)NCBIMGSCv36mm8
Celera1196,711,276 - 96,725,039 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.91NCBI
Ska2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,418,707 - 72,436,721 (+)NCBIGRCr8
mRatBN7.21071,921,474 - 71,939,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,921,582 - 71,939,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,532,084 - 76,549,889 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,036,988 - 76,054,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,501,512 - 71,519,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,413,989 - 74,431,922 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,413,989 - 74,431,922 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,668,741 - 75,686,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,383,081 - 75,400,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,397,450 - 75,415,258 (+)NCBI
Celera1070,837,768 - 70,855,580 (+)NCBICelera
Cytogenetic Map10q26NCBI
SKA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21975,277,226 - 75,322,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11780,090,268 - 80,133,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01753,181,345 - 53,226,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11758,030,137 - 58,076,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1758,030,137 - 58,076,113 (-)Ensemblpanpan1.1panPan2
SKA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,692,089 - 33,728,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,692,302 - 33,728,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,925,938 - 32,962,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,497,651 - 34,533,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,283,420 - 33,319,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,572,430 - 33,608,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,659,101 - 33,695,267 (-)NCBIUU_Cfam_GSD_1.0
Ska2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,918,501 - 32,956,260 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364904,119,050 - 4,157,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,396,567 - 35,433,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,396,565 - 35,433,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,074,628 - 37,111,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SKA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,266,937 - 34,306,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,267,161 - 34,304,686 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660775,069,273 - 5,109,026 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013519227   ⟹   XP_013374681
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554513,839,978 - 3,862,200 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374681 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013374681   ⟸   XM_013519227
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ska2 ENTREZGENE