Cd80 (CD80 antigen) - Rat Genome Database

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Gene: Cd80 (CD80 antigen) Mus musculus
Analyze
Symbol: Cd80
Name: CD80 antigen
RGD ID: 10316
MGI Page MGI
Description: Predicted to enable coreceptor activity. Acts upstream of or within T cell costimulation; cellular response to lipopolysaccharide; and positive regulation of alpha-beta T cell proliferation. Located in external side of plasma membrane. Is expressed in heart ventricle and skin. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human CD80 (CD80 molecule); PARTICIPATES IN allograft rejection pathway; autoimmune thyroiditis pathway; graft-versus-host disease pathway; INTERACTS WITH 1,2-dichloroethane; 1-chloro-2,4-dinitrobenzene; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: activation B7-1 antigen; B7 protein; B7-1; B7.1; B71; Cd28; Cd28l; Ly-5; Ly-53; Ly5; Ly53; MIC17; T-lymphocyte activation antigen CD80; TS/A-1; TSA1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,277,793 - 38,316,682 (+)NCBIGRCm39mm39
GRCm39 Ensembl1638,275,923 - 38,316,697 (+)Ensembl
GRCm381638,457,430 - 38,495,958 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,455,561 - 38,496,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv371638,459,013 - 38,487,015 (+)NCBIGRCm37mm9NCBIm37
MGSCv361638,378,414 - 38,418,102 (+)NCBImm8
Celera1638,869,381 - 38,897,547 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dichloroethane  (EXP)
1,4-benzoquinone  (ISO)
1-chloro-2,4-dinitrobenzene  (EXP)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-phenylprop-2-enal  (EXP)
4-methylhistamine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (EXP)
9-cis-retinoic acid  (ISO)
adenosine 5'-[gamma-thio]triphosphate  (EXP)
aldosterone  (ISO)
all-trans-retinoic acid  (ISO)
alpha-hexylcinnamaldehyde  (ISO)
aluminium hydroxide  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
antirheumatic drug  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
Bandrowski's base  (ISO)
benzo[a]pyrene  (ISO)
beta-D-glucan  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol F  (EXP)
bucladesine  (ISO)
calcitriol  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
chromium(6+)  (ISO)
clobetasol  (EXP)
clodronic acid  (EXP)
cortisol  (EXP,ISO)
daidzein  (EXP)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (EXP)
diethyl maleate  (ISO)
diisononyl phthalate  (EXP)
Dimaprit  (ISO)
dioxygen  (EXP)
endosulfan  (ISO)
eplerenone  (ISO)
estriol  (EXP)
ethyl methanesulfonate  (ISO)
famotidine  (ISO)
flavonoids  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
genistein  (EXP)
glucuronoxylomannan  (ISO)
helenalin  (ISO)
histamine  (ISO)
hydroquinone  (EXP)
hydroxycitronellal  (ISO)
imidurea  (ISO)
imiquimod  (EXP)
indirubin-3'-monoxime  (EXP)
indole-3-methanol  (EXP)
ionomycin  (ISO)
irinotecan  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (EXP,ISO)
lupane  (ISO)
methyl methanesulfonate  (ISO)
molybdenum trichloride  (EXP)
monosodium L-glutamate  (EXP)
muramyl dipeptide  (ISO)
N-nitrosodiethylamine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
naproxen  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
niclosamide  (EXP)
nystatin  (EXP)
paraquat  (ISO)
PCB138  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
poly(I:C)  (ISO)
polymyxin B2  (EXP)
procyanidin B3  (EXP)
progesterone  (EXP)
protein kinase inhibitor  (ISO)
quercetin  (EXP)
raloxifene  (EXP)
ranitidine  (ISO)
resveratrol  (EXP)
Senkirkine  (ISO)
silicon dioxide  (EXP)
simvastatin  (ISO)
sirolimus  (EXP)
sodium arsenite  (EXP)
streptozocin  (EXP)
succimer  (EXP)
sumatriptan  (ISO)
tacrolimus hydrate  (ISO)
thioacetamide  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)
vincristine  (ISO)
zinc protoporphyrin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Cao J, etal., Int Immunopharmacol. 2012 Aug 20.
2. Collins CB, etal., Gut. 2012 Aug;61(8):1154-62. Epub 2011 Nov 7.
3. Dolff S, etal., Arthritis Res Ther. 2010;12(4):R150. Epub 2010 Jul 23.
4. Duncan DS and Miller SD, PLoS One. 2011 Apr 8;6(4):e18548.
5. Freeman CM, etal., Am J Respir Crit Care Med. 2009 Dec 15;180(12):1179-88. Epub 2009 Sep 3.
6. Gallon L, etal., J Immunol. 1997 Nov 1;159(9):4212-6.
7. Hanabuchi S, etal., J Virol. 2000 Jan;74(1):428-35.
8. Huang Y, etal., Inflammation. 2018 Feb;41(1):232-239. doi: 10.1007/s10753-017-0681-7.
9. Jeong YI, etal., Biochem Biophys Res Commun. 2011 Apr 22;407(4):793-800. Epub 2011 Apr 1.
10. Judge TA, etal., Int Immunol 1995 Feb;7(2):171-8.
11. Kawai T, etal., J Immunol. 2000 Feb 15;164(4):2102-9.
12. Lee-Chang C, etal., Clin Immunol. 2011 Apr;139(1):12-20.
13. Li Q, etal., Cell Immunol. 2011;272(1):53-60. Epub 2011 Sep 29.
14. Lumsden JM, etal., J Immunol. 2000 Jan 1;164(1):79-85.
15. MGD and Homologene mouse data transfer
16. MGD data from the GO Consortium
17. MGD IEA
18. Page K, etal., J Innate Immun. 2011;3(2):167-79. Epub 2010 Nov 5.
19. Pang S, etal., Eur J Immunol. 2009 Oct;39(10):2716-24.
20. Pechhold K, etal., J Immunol. 2001 Feb 15;166(4):2531-9.
21. Phares TW, etal., J Immunol. 2010 Nov 1;185(9):5607-18. Epub 2010 Sep 27.
22. Pipeline to import KEGG annotations from KEGG into RGD
23. Reynolds J, etal., J Clin Invest. 2000 Mar;105(5):643-51.
24. RGD automated import pipeline
25. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
26. RGD automated import pipeline for gene-chemical interactions
27. Roquilly A, etal., PLoS One. 2010 Oct 7;5(10):e13228.
28. Sharma S, etal., Pediatr Allergy Immunol. 2012 Jun;23(4):315-23. doi: 10.1111/j.1399-3038.2011.01243.x. Epub 2011 Dec 23.
29. Toapanta FR and Ross TM, Respir Res. 2009 Nov 18;10:112.
30. Tobita K, etal., Anim Sci J. 2010 Dec;81(6):699-705. doi: 10.1111/j.1740-0929.2010.00795.x. Epub 2010 Oct 7.
31. Visse E, etal., Cancer Gene Ther 1999 Jan-Feb;6(1):37-44.
32. Wu K, etal., Cell Mol Immunol. 2006 Jun;3(3):213-20.
33. Zhang F, etal., Clin Exp Immunol. 2011 May;164(2):256-64. doi: 10.1111/j.1365-2249.2011.04328.x. Epub 2011 Feb 24.
Additional References at PubMed
PMID:1328465   PMID:1373896   PMID:1377173   PMID:1385153   PMID:1431091   PMID:1714935   PMID:1847722   PMID:1847724   PMID:2147207   PMID:2164219   PMID:7499830   PMID:7504059  
PMID:7509723   PMID:7513163   PMID:7514631   PMID:7515723   PMID:7515912   PMID:7518793   PMID:7519245   PMID:7519638   PMID:7522010   PMID:7525722   PMID:7525726   PMID:7531145  
PMID:7533084   PMID:7533734   PMID:7538050   PMID:7538528   PMID:7541819   PMID:7544393   PMID:7545666   PMID:7602158   PMID:7642234   PMID:7686531   PMID:7694362   PMID:7964482  
PMID:8244464   PMID:8566034   PMID:8575824   PMID:8605933   PMID:8625983   PMID:8683128   PMID:8746558   PMID:8752905   PMID:8881659   PMID:8943044   PMID:8996079   PMID:9075931  
PMID:9139887   PMID:9233610   PMID:9244437   PMID:9250865   PMID:9414285   PMID:9414288   PMID:9492990   PMID:9548473   PMID:9557159   PMID:9600957   PMID:9647206   PMID:9665379  
PMID:9690456   PMID:9743334   PMID:10072537   PMID:10349636   PMID:10370375   PMID:10438978   PMID:10453003   PMID:10477557   PMID:10490971   PMID:10524207   PMID:10590107   PMID:10605004  
PMID:10630300   PMID:10679081   PMID:10696062   PMID:10725709   PMID:10784605   PMID:10795741   PMID:10820290   PMID:10853965   PMID:10975864   PMID:11015443   PMID:11029611   PMID:11042159  
PMID:11076861   PMID:11120800   PMID:11160311   PMID:11169445   PMID:11217851   PMID:11285307   PMID:11726649   PMID:11807776   PMID:11826754   PMID:11877291   PMID:11884443   PMID:11911464  
PMID:11929778   PMID:11937530   PMID:11956287   PMID:11986256   PMID:12165495   PMID:12174878   PMID:12207354   PMID:12210763   PMID:12218093   PMID:12218136   PMID:12239309   PMID:12244135  
PMID:12370335   PMID:12401715   PMID:12429713   PMID:12444119   PMID:12444136   PMID:12466851   PMID:12477932   PMID:12517941   PMID:12642836   PMID:12649745   PMID:12682276   PMID:12759417  
PMID:12835481   PMID:12847135   PMID:12933569   PMID:12946862   PMID:14560001   PMID:14610273   PMID:14688306   PMID:14724434   PMID:14742503   PMID:14966193   PMID:15008968   PMID:15034031  
PMID:15096453   PMID:15128741   PMID:15146236   PMID:15191948   PMID:15197224   PMID:15235129   PMID:15240714   PMID:15314074   PMID:15356139   PMID:15385483   PMID:15470046   PMID:15482852  
PMID:15522961   PMID:15568026   PMID:15598660   PMID:15630140   PMID:15634886   PMID:15657954   PMID:15778288   PMID:15780990   PMID:15788440   PMID:15808622   PMID:15843526   PMID:15882983  
PMID:15905503   PMID:15919909   PMID:15944341   PMID:15983204   PMID:16002674   PMID:16002709   PMID:16014035   PMID:16078277   PMID:16141072   PMID:16141073   PMID:16148116   PMID:16221763  
PMID:16237042   PMID:16237117   PMID:16272276   PMID:16301639   PMID:16339518   PMID:16424201   PMID:16462800   PMID:16469054   PMID:16476058   PMID:16703564   PMID:16724117   PMID:16797370  
PMID:16805995   PMID:16814254   PMID:16818658   PMID:16823840   PMID:16879309   PMID:16886063   PMID:16920930   PMID:16920933   PMID:16934307   PMID:16940527   PMID:16980510   PMID:17109973  
PMID:17111349   PMID:17122127   PMID:17130783   PMID:17142739   PMID:17182586   PMID:17237403   PMID:17289146   PMID:17314080   PMID:17372085   PMID:17376197   PMID:17429849   PMID:17442938  
PMID:17513738   PMID:17549473   PMID:17618911   PMID:17626150   PMID:17629367   PMID:17629517   PMID:17699744   PMID:17911596   PMID:17982038   PMID:17989345   PMID:18026115   PMID:18178855  
PMID:18205792   PMID:18250436   PMID:18279702   PMID:18328742   PMID:18453575   PMID:18606642   PMID:18607347   PMID:18617557   PMID:18628995   PMID:18684012   PMID:18684917   PMID:18802089  
PMID:18832683   PMID:18832694   PMID:18848472   PMID:18848987   PMID:19047410   PMID:19124719   PMID:19179471   PMID:19188497   PMID:19201420   PMID:19202065   PMID:19234186   PMID:19249124  
PMID:19249753   PMID:19265158   PMID:19326996   PMID:19398542   PMID:19454657   PMID:19672303   PMID:19757438   PMID:19770391   PMID:19811307   PMID:19917693   PMID:19933871   PMID:20065109  
PMID:20114085   PMID:20472828   PMID:20563597   PMID:20574047   PMID:20601595   PMID:20601598   PMID:20628373   PMID:20686128   PMID:20724599   PMID:20802149   PMID:20956339   PMID:20980516  
PMID:21040905   PMID:21115734   PMID:21119111   PMID:21126972   PMID:21263067   PMID:21267068   PMID:21267999   PMID:21357256   PMID:21389258   PMID:21441451   PMID:21474713   PMID:21555535  
PMID:21690252   PMID:21697455   PMID:21697456   PMID:21726119   PMID:21873635   PMID:21884581   PMID:21900177   PMID:22307040   PMID:22312128   PMID:22450810   PMID:22544394   PMID:22585421  
PMID:22733595   PMID:22798683   PMID:22908331   PMID:23071696   PMID:23248258   PMID:23248264   PMID:23281398   PMID:23300712   PMID:23362346   PMID:23377201   PMID:23417675   PMID:23439211  
PMID:23487421   PMID:23533995   PMID:23584070   PMID:23630352   PMID:23671644   PMID:23744647   PMID:23793062   PMID:23908246   PMID:23918985   PMID:24099792   PMID:24222350   PMID:24270545  
PMID:24317039   PMID:24337745   PMID:24338929   PMID:24507064   PMID:24532579   PMID:24687086   PMID:24752446   PMID:24771983   PMID:24807557   PMID:24845056   PMID:24880458   PMID:24886282  
PMID:24981893   PMID:25002484   PMID:25355918   PMID:25488990   PMID:25548162   PMID:25653051   PMID:26263500   PMID:26410627   PMID:27034402   PMID:27037189   PMID:27075414   PMID:27125280  
PMID:27432861   PMID:27528551   PMID:27569212   PMID:27729526   PMID:28270509   PMID:28414296   PMID:28466138   PMID:28767735   PMID:28768709   PMID:28856392   PMID:28919076   PMID:29181416  
PMID:29862277   PMID:30068595   PMID:30427069   PMID:30814730   PMID:31000591   PMID:31010850   PMID:31072360   PMID:31263704   PMID:31552487   PMID:31619558   PMID:31852788   PMID:32049052  
PMID:33293517  


Genomics

Comparative Map Data
Cd80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,277,793 - 38,316,682 (+)NCBIGRCm39mm39
GRCm39 Ensembl1638,275,923 - 38,316,697 (+)Ensembl
GRCm381638,457,430 - 38,495,958 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,455,561 - 38,496,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv371638,459,013 - 38,487,015 (+)NCBIGRCm37mm9NCBIm37
MGSCv361638,378,414 - 38,418,102 (+)NCBImm8
Celera1638,869,381 - 38,897,547 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.86NCBI
CD80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3119,524,293 - 119,559,614 (-)EnsemblGRCh38hg38GRCh38
GRCh383119,524,293 - 119,559,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373119,243,140 - 119,278,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,725,830 - 120,761,171 (-)NCBINCBI36hg18NCBI36
Build 343120,725,831 - 120,761,139NCBI
Celera3117,651,693 - 117,687,039 (-)NCBI
Cytogenetic Map3q13.33NCBI
HuRef3116,618,830 - 116,654,199 (-)NCBIHuRef
CHM1_13119,206,623 - 119,241,981 (-)NCBICHM1_1
Cd80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21162,254,543 - 62,293,414 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1162,254,624 - 62,292,030 (-)Ensembl
Rnor_6.01164,815,201 - 64,855,293 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,827,635 - 64,855,353 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,255,123 - 67,291,544 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,045,358 - 64,070,072 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11164,102,946 - 64,127,661 (-)NCBI
Celera1161,768,874 - 61,793,351 (-)NCBICelera
RH 3.4 Map11500.9RGD
Cytogenetic Map11q21NCBI
Cd80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542719,236,445 - 19,261,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542719,237,251 - 19,274,001 (-)NCBIChiLan1.0ChiLan1.0
CD80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13123,559,559 - 123,594,870 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,559,559 - 123,594,870 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03116,646,590 - 116,683,725 (-)NCBIMhudiblu_PPA_v0panPan3
CD80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13323,177,136 - 23,208,421 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3323,177,138 - 23,201,380 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3323,207,369 - 23,231,610 (-)NCBI
ROS_Cfam_1.03323,415,441 - 23,446,725 (-)NCBI
UMICH_Zoey_3.13323,217,902 - 23,242,129 (-)NCBI
UNSW_CanFamBas_1.03323,253,474 - 23,277,692 (-)NCBI
UU_Cfam_GSD_1.03323,822,928 - 23,847,156 (-)NCBI
Cd80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,033,618 - 131,058,267 (+)NCBI
SpeTri2.0NW_0049365366,462,080 - 6,483,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,693,382 - 140,728,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,693,312 - 140,730,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,031,804 - 150,044,259 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,258,281 - 61,294,772 (+)NCBI
Vero_WHO_p1.0NW_023666041105,020,341 - 105,055,630 (-)NCBI
Cd80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473128,630,540 - 28,655,297 (+)NCBI

Position Markers
Ckb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381638,484,226 - 38,484,390UniSTSGRCm38
GRCm384122,009,149 - 122,009,313UniSTSGRCm38
MGSCv371638,484,308 - 38,484,472UniSTSGRCm37
MGSCv374121,757,124 - 121,757,288UniSTSGRCm37
Celera1638,894,837 - 38,895,001UniSTS
Celera4120,680,282 - 120,680,446UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map16B5UniSTS
cM Map1255.0UniSTS
cM Map1255.0UniSTS
cM Map1255.0UniSTS
cM Map1628.0UniSTS
BF402875  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381638,475,506 - 38,475,605UniSTSGRCm38
MGSCv371638,475,588 - 38,475,687UniSTSGRCm37
Celera1638,886,116 - 38,886,215UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map16B5UniSTS
cM Map1628.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16350000040000000Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16350000051600000Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16350000064800000Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16400000064800000Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16450000044700000Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16482756438827664Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16595650239956690Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16595650239956690Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16595650239956690Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16595650239956690Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16672511565669666Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16840730242407302Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16860000091100000Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined161006288144062881Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161203007246030171Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161240654246406653Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161498410348984214Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161570409149704294Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162020057985803938Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162211802156118212Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2295650257773713Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162897245062972589Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162897245062972589Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162897245062972589Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162897245062972589Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163249243266492570Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3270409165669666Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163562627392776120Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163624048745690785Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163750000084900000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:175
Interacting mature miRNAs:192
Transcripts:ENSMUST00000099816
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC209577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH001849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH004645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY278186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT571259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U26832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U33063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000099816   ⟹   ENSMUSP00000097404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1638,279,295 - 38,307,295 (+)Ensembl
GRCm38.p6 Ensembl1638,458,933 - 38,486,933 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231716   ⟹   ENSMUSP00000156031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1638,275,923 - 38,316,697 (+)Ensembl
GRCm38.p6 Ensembl1638,455,561 - 38,496,335 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232409   ⟹   ENSMUSP00000156252
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1638,279,480 - 38,306,809 (+)Ensembl
GRCm38.p6 Ensembl1638,459,118 - 38,486,447 (+)Ensembl
RefSeq Acc Id: NM_001359898   ⟹   NP_001346827
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,279,295 - 38,316,320 (+)NCBI
GRCm381638,458,933 - 38,495,958 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009855   ⟹   NP_033985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,279,295 - 38,307,295 (+)NCBI
GRCm381638,458,933 - 38,486,933 (+)NCBI
MGSCv371638,459,013 - 38,487,015 (+)RGD
Celera1638,869,381 - 38,897,547 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030248945   ⟹   XP_030104805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,277,793 - 38,315,092 (+)NCBI
GRCm381638,457,431 - 38,487,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159758   ⟹   XP_036015651
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,277,793 - 38,316,682 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033985   ⟸   NM_009855
- Peptide Label: precursor
- UniProtKB: Q00609 (UniProtKB/Swiss-Prot),   Q549R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104805   ⟸   XM_030248945
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001346827   ⟸   NM_001359898
- Peptide Label: precursor
RefSeq Acc Id: ENSMUSP00000097404   ⟸   ENSMUST00000099816
RefSeq Acc Id: ENSMUSP00000156031   ⟸   ENSMUST00000231716
RefSeq Acc Id: ENSMUSP00000156252   ⟸   ENSMUST00000232409
RefSeq Acc Id: XP_036015651   ⟸   XM_036159758
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Promoters
RGD ID:8686194
Promoter ID:EPDNEW_M21127
Type:multiple initiation site
Name:Cd80_2
Description:Mus musculus CD80 antigen , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21128  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381638,457,444 - 38,457,504EPDNEW
RGD ID:6826894
Promoter ID:MM_KWN:20983
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000099816,   ENSMUST00000114728
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361638,458,741 - 38,459,241 (+)MPROMDB
RGD ID:8686196
Promoter ID:EPDNEW_M21128
Type:initiation region
Name:Cd80_1
Description:Mus musculus CD80 antigen , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381638,458,898 - 38,458,958EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101775 AgrOrtholog
Ensembl Genes ENSMUSG00000075122 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000097404 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000156031 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000156252 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000099816 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000231716 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000232409 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD80_IgC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD80_IgV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12519 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101775 ENTREZGENE
NCBI Gene 12519 ENTREZGENE
Pfam C2-set_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd80 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CD80_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U4B5_MOUSE UniProtKB/TrEMBL
  Q549R2 ENTREZGENE, UniProtKB/TrEMBL
  Q9R1Z9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q61332 UniProtKB/Swiss-Prot