Cd24a (CD24a antigen) - Rat Genome Database

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Gene: Cd24a (CD24a antigen) Mus musculus
Analyze
Symbol: Cd24a
Name: CD24a antigen
RGD ID: 10306
MGI Page MGI
Description: Enables Hsp70 protein binding activity; Hsp90 protein binding activity; and carbohydrate binding activity. Involved in several processes, including chemokine receptor transport out of membrane raft; negative regulation of cytokine production; and regulation of inflammatory response to wounding. Acts upstream of or within several processes, including positive regulation of immune response; regulation of cell-cell adhesion; and regulation of lymphocyte activation. Located in cell projection membrane; external side of plasma membrane; and membrane raft. Is anchored component of external side of plasma membrane. Is expressed in several structures, including extraembryonic component; genitourinary system; hemolymphoid system; hindlimb; and retina. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human CD24 (CD24 molecule); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Cd24; cluster of differentiation 24; H; heat stable antigen; HSA; Ly-5; Ly-52; lymphocyte antigen 52; M1/69-J11D heat stable antigen; nect; nectadrin; R13-Ag; signal transducer CD24; X62 heat stable antigen
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15352   Gm6212  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,454,433 - 43,460,261 (+)NCBIGRCm39mm39
GRCm39 Ensembl1043,454,280 - 43,460,261 (+)Ensembl
GRCm381043,579,169 - 43,584,265 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,578,284 - 43,584,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371043,298,975 - 43,304,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv361043,267,584 - 43,272,680 (+)NCBImm8
Celera1044,451,209 - 44,456,305 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucosamine  (EXP)
ammonium chloride  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
bacitracin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (EXP)
beta-naphthoflavone  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
casticin  (ISO)
chloropicrin  (ISO)
choline  (EXP)
chromium atom  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyproconazole  (EXP)
Deguelin  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP)
diethylstilbestrol  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
endosulfan  (ISO)
entinostat  (ISO)
eugenol  (ISO)
fenpyroximate  (ISO)
fenvalerate  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP)
griseofulvin  (EXP)
hexachlorobenzene  (ISO)
indole-3-methanol  (ISO)
isobutanol  (ISO)
ketamine  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lapatinib  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
PhIP  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sarin  (ISO)
SB 431542  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
streptozocin  (EXP)
succimer  (EXP)
sulforaphane  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thalidomide  (EXP)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
Trapidil  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
Triptolide  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic mitochondrial changes  (IDA)
apoptotic nuclear changes  (IDA)
apoptotic signaling pathway  (IDA)
B cell receptor transport into membrane raft  (ISO)
cell activation  (ISO,ISS)
cell adhesion  (IEA)
cell migration  (IMP)
cell surface receptor signaling pathway  (IDA)
chemokine receptor transport out of membrane raft  (IMP)
cholesterol homeostasis  (IMP)
glomerular parietal epithelial cell differentiation  (ISO)
glomerular visceral epithelial cell differentiation  (ISO)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (IDA)
homotypic cell-cell adhesion  (IMP)
immune response  (ISO)
immune system process  (IEA)
innate immune response  (IEA)
leukocyte cell-cell adhesion  (IDA)
leukocyte migration involved in inflammatory response  (IMP)
negative regulation of B cell proliferation  (IDA)
negative regulation of erythrocyte aggregation  (IMP)
negative regulation of erythrocyte clearance  (IMP)
negative regulation of inflammatory response to wounding  (IPI)
negative regulation of interleukin-6 production  (IMP)
negative regulation of monocyte chemotactic protein-1 production  (IMP)
negative regulation of neuroblast proliferation  (IMP)
negative regulation of neurogenesis  (IMP)
negative regulation of neuron differentiation  (IMP)
negative regulation of T cell homeostatic proliferation  (IMP)
negative regulation of transforming growth factor beta3 production  (ISO,ISS)
negative regulation of tumor necrosis factor production  (IMP)
neuromuscular synaptic transmission  (IGI,IMP)
neuron projection development  (IDA,IMP)
positive regulation of activated T cell proliferation  (ISO,ISS)
positive regulation of alpha-beta T cell proliferation  (IDA,IMP)
positive regulation of B cell apoptotic process  (IDA)
positive regulation of calcium-mediated signaling  (IDA)
positive regulation of cell adhesion mediated by integrin  (IDA,IMP)
positive regulation of cell-cell adhesion  (IDA)
positive regulation of cell-cell adhesion mediated by integrin  (IDA)
positive regulation of cytosolic calcium ion concentration  (ISO,ISS)
positive regulation of inflammatory response to antigenic stimulus  (IMP)
positive regulation of inflammatory response to wounding  (IMP)
positive regulation of integrin activation  (IDA,IMP)
positive regulation of MAP kinase activity  (ISO,ISS)
positive regulation of nephron tubule epithelial cell differentiation  (ISO)
positive regulation of neuron projection development  (IDA,IGI)
positive regulation of peptidyl-tyrosine phosphorylation  (IDA)
positive regulation of T cell homeostatic proliferation  (IMP)
positive regulation of T cell mediated immune response to tumor cell  (IDA)
pre-B cell differentiation  (IMP)
regulation of B cell differentiation  (IMP)
regulation of cell-cell adhesion  (IDA)
regulation of cell-cell adhesion mediated by integrin  (IDA)
regulation of cytokine-mediated signaling pathway  (IMP)
regulation of MAPK cascade  (ISO,ISS)
regulation of phosphorylation  (ISO,ISS)
respiratory burst  (ISO,ISS)
response to estrogen  (ISS)
response to hypoxia  (ISS)
response to molecule of bacterial origin  (IDA)
synaptic vesicle endocytosis  (IMP)
T cell costimulation  (ISO,ISS)

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1346270   PMID:1383383   PMID:1385153   PMID:1431091   PMID:1530634   PMID:2019286   PMID:2118158   PMID:2153173   PMID:7477352   PMID:7524641   PMID:7534304   PMID:7613634  
PMID:7669058   PMID:7774619   PMID:7795661   PMID:7807014   PMID:7908303   PMID:8117278   PMID:8125140   PMID:8145052   PMID:8223854   PMID:8226859   PMID:8314004   PMID:8543797  
PMID:8557754   PMID:8562500   PMID:8753773   PMID:8783272   PMID:8920854   PMID:8943715   PMID:9004038   PMID:9016874   PMID:9028339   PMID:9038707   PMID:9048906   PMID:9129046  
PMID:9177270   PMID:9324354   PMID:9368605   PMID:9529332   PMID:10037815   PMID:10051318   PMID:10349636   PMID:10365441   PMID:10601245   PMID:10648399   PMID:10747007   PMID:10791997  
PMID:10922068   PMID:10943842   PMID:11009103   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11272271   PMID:11283023   PMID:11313396   PMID:11707774   PMID:11978835   PMID:12466851  
PMID:12477932   PMID:12496407   PMID:12829373   PMID:12857878   PMID:12882831   PMID:12940824   PMID:14610273   PMID:14707049   PMID:14990792   PMID:15174142   PMID:15226823   PMID:15275971  
PMID:15314074   PMID:15339983   PMID:15477346   PMID:15489334   PMID:15493995   PMID:15633604   PMID:15711057   PMID:15737737   PMID:15851520   PMID:16107646   PMID:16141072   PMID:16141073  
PMID:16390867   PMID:16602821   PMID:16606832   PMID:16769998   PMID:16930538   PMID:17522896   PMID:17700640   PMID:18022325   PMID:18185529   PMID:18287559   PMID:18566397   PMID:18632604  
PMID:18776904   PMID:18958875   PMID:18973680   PMID:19228596   PMID:19264983   PMID:19284289   PMID:19299737   PMID:19334288   PMID:19458237   PMID:19487454   PMID:19725119   PMID:19786366  
PMID:19998061   PMID:20103531   PMID:20164345   PMID:20185687   PMID:20200945   PMID:20352469   PMID:20473291   PMID:21037089   PMID:21116636   PMID:21183658   PMID:21267068   PMID:21361791  
PMID:21491542   PMID:21530336   PMID:21873635   PMID:21905163   PMID:22213356   PMID:22497843   PMID:22698401   PMID:22723265   PMID:22732588   PMID:22899822   PMID:23012401   PMID:23374343  
PMID:23375831   PMID:23881416   PMID:24154525   PMID:24192035   PMID:24500912   PMID:24614228   PMID:24631155   PMID:24695850   PMID:24706781   PMID:24808359   PMID:24952961   PMID:24956310  
PMID:25600590   PMID:25641732   PMID:25883935   PMID:25969154   PMID:26076835   PMID:26440795   PMID:26536476   PMID:26978528   PMID:27179633   PMID:27203385   PMID:27527664   PMID:27729526  
PMID:28065940   PMID:28182766   PMID:29390019   PMID:29513653   PMID:29620414   PMID:30231671   PMID:30564864   PMID:30718509   PMID:30824354   PMID:31246945  


Genomics

Comparative Map Data
Cd24a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,454,433 - 43,460,261 (+)NCBIGRCm39mm39
GRCm39 Ensembl1043,454,280 - 43,460,261 (+)Ensembl
GRCm381043,579,169 - 43,584,265 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,578,284 - 43,584,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371043,298,975 - 43,304,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv361043,267,584 - 43,272,680 (+)NCBImm8
Celera1044,451,209 - 44,456,305 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.01NCBI
CD24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6106,969,831 - 106,975,627 (-)EnsemblGRCh38hg38GRCh38
GRCh386106,969,831 - 106,976,855 (-)NCBIGRCh38GRCh38hg38GRCh38
Build 36621,152,527 - 21,154,705NCBINCBI36hg18NCBI36
Build 34Y19,540,683 - 19,542,776NCBI
CeleraY6,620,552 - 6,622,554 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6104,864,115 - 104,868,879 (-)NCBIHuRef
Cd24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22047,074,353 - 47,079,662 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2047,073,512 - 47,079,662 (+)Ensembl
Rnor_6.02048,335,540 - 48,340,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,335,540 - 48,340,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,989,320 - 49,994,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,502,354 - 47,507,663 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12047,531,055 - 47,536,352 (+)NCBI
Celera2052,908,730 - 52,914,027 (-)NCBICelera
RH 3.4 Map20495.52RGD
RH 3.4 Map20493.45RGD
Cytogenetic Map20q13NCBI
Cd24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBIChiLan1.0ChiLan1.0
CD24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11535,991,289 - 35,993,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,655,624 - 108,657,847 (-)NCBIpanpan1.1panPan2
Mhudiblu_PPA_v06104,783,720 - 104,789,509 (-)NCBIMhudiblu_PPA_v0panPan3
CD24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,239,957 - 64,245,114 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,026,788 - 64,032,059 (-)NCBI
ROS_Cfam_1.01265,083,676 - 65,088,953 (-)NCBI
UMICH_Zoey_3.11264,443,727 - 64,448,980 (-)NCBI
UNSW_CanFamBas_1.01264,287,882 - 64,293,144 (-)NCBI
UU_Cfam_GSD_1.01264,561,114 - 64,566,403 (-)NCBI
LOC101968601
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629211,864,267 - 11,864,552 (-)NCBI
SpeTri2.0NW_00493649116,706,745 - 16,707,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100519934
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1173,119,758 - 73,124,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,267,687 - 82,273,306 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,863,164 - 66,868,951 (+)NCBI
Vero_WHO_p1.0NW_02366604039,191,025 - 39,196,629 (+)NCBI
Cd24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478015,287,426 - 15,292,292 (+)NCBI

Position Markers
D10Mit107  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381043,581,643 - 43,581,744UniSTSGRCm38
MGSCv371043,301,449 - 43,301,550UniSTSGRCm37
Celera1044,453,683 - 44,453,784UniSTS
Cytogenetic Map10B2UniSTS
cM Map1026.0UniSTS
Whitehead Genetic1018.6UniSTS
PMC123054P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814119,643,979 - 119,644,165UniSTSGRCm38
MGSCv3714120,043,201 - 120,043,387UniSTSGRCm37
Celera14118,205,941 - 118,206,127UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map10B2UniSTS
cM Map1026.0UniSTS
Cd24a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B2UniSTS
cM Map1023.01UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208561Wght8_mweight 8 (mouse)10500000044000000Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10620194558857699Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined101001426844014395Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined101001426844014395Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined101001426844014395Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
10755518Chol16_mcholesterol 16 (mouse)101903904753039047Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102040743956155127Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102171529368255809Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102250000051200000Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102701426846844387Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102984430763844387Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103109840365098534Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103170104065701188Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103390000071000000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4140150475401504Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:427
Count of miRNA genes:302
Interacting mature miRNAs:339
Transcripts:ENSMUST00000058714
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000058714   ⟹   ENSMUSP00000057983
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,455,165 - 43,460,261 (+)Ensembl
GRCm38.p6 Ensembl1043,579,169 - 43,584,265 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214476   ⟹   ENSMUSP00000148921
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,455,931 - 43,459,123 (+)Ensembl
GRCm38.p6 Ensembl1043,579,935 - 43,583,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214532
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,454,280 - 43,455,193 (+)Ensembl
GRCm38.p6 Ensembl1043,578,284 - 43,579,197 (+)Ensembl
RefSeq Acc Id: NM_009846   ⟹   NP_033976
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,455,165 - 43,460,261 (+)NCBI
GRCm381043,579,169 - 43,584,265 (+)ENTREZGENE
MGSCv371043,298,975 - 43,304,071 (+)RGD
Celera1044,451,209 - 44,456,305 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036155569   ⟹   XP_036011462
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,454,433 - 43,460,261 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033976   ⟸   NM_009846
- Peptide Label: precursor
- UniProtKB: P24807 (UniProtKB/Swiss-Prot),   Q3THW4 (UniProtKB/TrEMBL),   Q8CEU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000057983   ⟸   ENSMUST00000058714
RefSeq Acc Id: ENSMUSP00000148921   ⟸   ENSMUST00000214476
RefSeq Acc Id: XP_036011462   ⟸   XM_036155569
- Peptide Label: isoform X1

Promoters
RGD ID:6819091
Promoter ID:MM_KWN:4043
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_009846
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361043,298,256 - 43,299,232 (+)MPROMDB
RGD ID:6846704
Promoter ID:MM_ACW:4514
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:CD24A.ASEP07,   CD24A.DSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361043,299,511 - 43,300,011 (+)MPROMDB
RGD ID:8671916
Promoter ID:EPDNEW_M13989
Type:multiple initiation site
Name:Cd24a_1
Description:Mus musculus CD24a antigen , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381043,579,171 - 43,579,231EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88323 AgrOrtholog
Ensembl Genes ENSMUSG00000047139 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000057983 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148921 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058714 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000214476 UniProtKB/TrEMBL
InterPro CD24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12484 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88323 ENTREZGENE
NCBI Gene 12484 ENTREZGENE
PANTHER PTHR16676 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd24a PhenoGen
UniProt A0A1L1SQ70_MOUSE UniProtKB/TrEMBL
  CD24_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3THW4 ENTREZGENE, UniProtKB/TrEMBL
  Q8CEU3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P26691 UniProtKB/Swiss-Prot