CD2 (CD2 molecule) - Rat Genome Database

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Gene: CD2 (CD2 molecule) Homo sapiens
Analyze
Symbol: CD2
Name: CD2 molecule
RGD ID: 10305
HGNC Page HGNC
Description: Enables signaling receptor binding activity. Involved in heterotypic cell-cell adhesion and positive regulation of cytokine production. Located in external side of plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: cd2 antigen; CD2 antigen (p50), sheep red blood cell receptor; erythrocyte receptor; FLJ46032; LFA-2; LFA-3 receptor; lymphocyte-function antigen-2; rosette receptor; SRBC; T-cell surface antigen CD2; T-cell surface antigen T11/Leu-5; T11
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1116,754,430 - 116,769,229 (+)EnsemblGRCh38hg38GRCh38
GRCh381116,754,430 - 116,769,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371117,297,052 - 117,311,851 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,098,609 - 117,113,374 (+)NCBINCBI36hg18NCBI36
Build 341117,009,143 - 117,023,892NCBI
Celera1115,525,598 - 115,540,363 (+)NCBI
Cytogenetic Map1p13.1NCBI
HuRef1115,156,224 - 115,170,989 (+)NCBIHuRef
CHM1_11117,411,979 - 117,426,744 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Additional References at PubMed
PMID:1346273   PMID:1351089   PMID:1377404   PMID:1385321   PMID:1832084   PMID:1970422   PMID:1976695   PMID:2111780   PMID:2437578   PMID:2444890   PMID:2471997   PMID:2883656  
PMID:2894031   PMID:2901953   PMID:3490670   PMID:7517794   PMID:7539755   PMID:7544493   PMID:7589092   PMID:7686927   PMID:7915183   PMID:7933095   PMID:7994575   PMID:8125298  
PMID:8551220   PMID:8809126   PMID:8977276   PMID:9270771   PMID:9475352   PMID:9677430   PMID:9741631   PMID:9743208   PMID:9843987   PMID:9857189   PMID:10380930   PMID:10404223  
PMID:10510361   PMID:10575274   PMID:10642604   PMID:10722370   PMID:11090067   PMID:11152963   PMID:11376005   PMID:11544295   PMID:11575926   PMID:11591762   PMID:11602341   PMID:11932928  
PMID:11971877   PMID:12032326   PMID:12356317   PMID:12369898   PMID:12426371   PMID:12477932   PMID:12530983   PMID:12618476   PMID:12690097   PMID:12714509   PMID:12731040   PMID:15105431  
PMID:15345303   PMID:15489334   PMID:15528362   PMID:16000308   PMID:16049493   PMID:16710414   PMID:16803907   PMID:17020880   PMID:17085486   PMID:17168569   PMID:17344209   PMID:18051367  
PMID:18318997   PMID:18431797   PMID:19109405   PMID:19237575   PMID:19494291   PMID:19502238   PMID:19586919   PMID:19898481   PMID:20813844   PMID:21048031   PMID:21300823   PMID:21460847  
PMID:21982860   PMID:21987572   PMID:21988832   PMID:22013130   PMID:22084431   PMID:22222639   PMID:22634534   PMID:23112830   PMID:23314748   PMID:23663663   PMID:23760244   PMID:24072102  
PMID:24390342   PMID:24597656   PMID:25402852   PMID:25984915   PMID:26041540   PMID:26791160   PMID:27117418   PMID:27385538   PMID:28409241   PMID:29997244   PMID:31324882  


Genomics

Comparative Map Data
CD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1116,754,430 - 116,769,229 (+)EnsemblGRCh38hg38GRCh38
GRCh381116,754,430 - 116,769,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371117,297,052 - 117,311,851 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,098,609 - 117,113,374 (+)NCBINCBI36hg18NCBI36
Build 341117,009,143 - 117,023,892NCBI
Celera1115,525,598 - 115,540,363 (+)NCBI
Cytogenetic Map1p13.1NCBI
HuRef1115,156,224 - 115,170,989 (+)NCBIHuRef
CHM1_11117,411,979 - 117,426,744 (+)NCBICHM1_1
Cd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393101,183,224 - 101,195,255 (-)NCBIGRCm39mm39
GRCm39 Ensembl3101,183,215 - 101,195,255 (-)Ensembl
GRCm383101,275,908 - 101,287,939 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3101,275,899 - 101,287,939 (-)EnsemblGRCm38mm10GRCm38
MGSCv373101,079,831 - 101,091,862 (-)NCBIGRCm37mm9NCBIm37
MGSCv363101,404,969 - 101,417,000 (-)NCBImm8
Celera3103,490,645 - 103,502,693 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map344.17NCBI
Cd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22188,710,895 - 188,724,044 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl2203,666,637 - 203,680,083 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02203,666,706 - 203,680,073 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02223,111,198 - 223,124,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,332,547 - 196,346,221 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12196,295,300 - 196,660,648 (-)NCBI
Celera2181,149,611 - 181,162,644 (-)NCBICelera
Cytogenetic Map2q34NCBI
Cd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,861,527 - 19,873,581 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,861,658 - 19,876,383 (+)NCBIChiLan1.0ChiLan1.0
CD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11120,749,918 - 120,764,664 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,749,918 - 120,764,659 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0185,752,522 - 85,767,323 (-)NCBIMhudiblu_PPA_v0panPan3
CD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11754,171,764 - 54,184,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1754,171,848 - 54,184,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1753,818,723 - 53,831,191 (+)NCBI
ROS_Cfam_1.01755,052,775 - 55,065,243 (+)NCBI
UMICH_Zoey_3.11754,089,963 - 54,102,397 (+)NCBI
UNSW_CanFamBas_1.01754,126,006 - 54,138,470 (+)NCBI
UU_Cfam_GSD_1.01754,699,355 - 54,711,821 (+)NCBI
Cd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,573,676 - 12,586,886 (-)NCBI
SpeTri2.0NW_0049366271,902,120 - 1,915,257 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4103,962,319 - 103,977,292 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14103,963,802 - 103,976,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24113,928,523 - 113,941,699 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12016,954,925 - 16,970,066 (-)NCBI
ChlSab1.1 Ensembl2016,953,811 - 16,970,044 (-)Ensembl
Vero_WHO_p1.0NW_02366603819,634,620 - 19,649,798 (-)NCBI
Cd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477212,428,885 - 12,445,003 (+)NCBI

Position Markers
D1S3452  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371117,311,097 - 117,311,355UniSTSGRCh37
Build 361117,112,620 - 117,112,878RGDNCBI36
Celera1115,539,609 - 115,539,867RGD
Cytogenetic Map1p13.1UniSTS
HuRef1115,170,235 - 115,170,493UniSTS
CD2_1700  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371117,311,167 - 117,311,848UniSTSGRCh37
Build 361117,112,690 - 117,113,371RGDNCBI36
Celera1115,539,679 - 115,540,360RGD
HuRef1115,170,305 - 115,170,986UniSTS
D1S3476  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371117,311,592 - 117,311,683UniSTSGRCh37
Build 361117,113,115 - 117,113,206RGDNCBI36
Celera1115,540,104 - 115,540,195RGD
Cytogenetic Map1p13.1UniSTS
HuRef1115,170,730 - 115,170,821UniSTS
GeneMap99-GB4 RH Map1388.68UniSTS
Whitehead-RH Map1442.5UniSTS
RH69083  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371117,311,370 - 117,311,576UniSTSGRCh37
Build 361117,112,893 - 117,113,099RGDNCBI36
Celera1115,539,882 - 115,540,088RGD
Cytogenetic Map1p13.1UniSTS
HuRef1115,170,508 - 115,170,714UniSTS
GeneMap99-GB4 RH Map1387.69UniSTS
NCBI RH Map1860.7UniSTS
L18426  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map2p23.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p25UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map12q24.1-q24.3UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p24.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map21q22.1UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map21q21.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map12p12.3UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map1p13-p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map10q21.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map20p11.21UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map10q11UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map12q21.31UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map9p21.1UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:307
Count of miRNA genes:281
Interacting mature miRNAs:294
Transcripts:ENST00000369477, ENST00000369478
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 381 750 186 74 1219 72 41 2 6 111 162 606 3 61 14 1
Low 1744 1366 1386 511 263 350 2833 924 1279 199 1070 775 162 1 1126 1607 2 1
Below cutoff 192 836 126 21 174 21 1213 1174 2095 64 116 25 1 17 1104 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_050908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001328609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH002740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL135798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD691699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR996443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS278858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH979251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M14362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M16336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M16445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000369477   ⟹   ENSP00000358489
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1116,754,467 - 116,755,021 (+)Ensembl
RefSeq Acc Id: ENST00000369478   ⟹   ENSP00000358490
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1116,754,430 - 116,769,229 (+)Ensembl
RefSeq Acc Id: NM_001328609   ⟹   NP_001315538
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381116,754,430 - 116,769,229 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001767   ⟹   NP_001758
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381116,754,430 - 116,769,229 (+)NCBI
GRCh371117,297,057 - 117,311,851 (+)NCBI
Build 361117,098,609 - 117,113,374 (+)NCBI Archive
HuRef1115,156,224 - 115,170,989 (+)ENTREZGENE
CHM1_11117,411,979 - 117,426,744 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001758   ⟸   NM_001767
- Peptide Label: isoform 2 precursor
- UniProtKB: P06729 (UniProtKB/Swiss-Prot),   Q53F96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001315538   ⟸   NM_001328609
- Peptide Label: isoform 1 precursor
- UniProtKB: P06729 (UniProtKB/Swiss-Prot),   Q53F96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000358489   ⟸   ENST00000369477
RefSeq Acc Id: ENSP00000358490   ⟸   ENST00000369478
Protein Domains
C2-set   Ig-like C2-type   Ig-like V-type   IGv

Promoters
RGD ID:6856746
Promoter ID:EPDNEW_H1538
Type:initiation region
Name:CD2_1
Description:CD2 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381116,754,430 - 116,754,490EPDNEW
RGD ID:6784879
Promoter ID:HG_KWN:4314
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat
Transcripts:ENST00000369477,   OTTHUMT00000059039
Position:
Human AssemblyChrPosition (strand)Source
Build 361117,098,324 - 117,098,824 (+)MPROMDB
RGD ID:6809530
Promoter ID:HG_ACW:3467
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:CD2.EAPR07,   GLYREEBO.AAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361117,107,421 - 117,107,921 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p13.1-12(chr1:116679122-119290029)x1 copy number loss See cases [RCV000051079] Chr1:116679122..119290029 [GRCh38]
Chr1:117221744..119832652 [GRCh37]
Chr1:117023267..119634175 [NCBI36]
Chr1:1p13.1-12
pathogenic
GRCh38/hg38 1p13.3-12(chr1:109756630-118650204)x3 copy number gain See cases [RCV000051827] Chr1:109756630..118650204 [GRCh38]
Chr1:110299252..119192827 [GRCh37]
Chr1:110100775..118994350 [NCBI36]
Chr1:1p13.3-12
pathogenic
GRCh38/hg38 1p13.1-12(chr1:116059621-120130051)x3 copy number gain See cases [RCV000051831] Chr1:116059621..120130051 [GRCh38]
Chr1:116602242..120672637 [GRCh37]
Chr1:116403765..120474160 [NCBI36]
Chr1:1p13.1-12
pathogenic
NM_001767.3(CD2):c.104G>A (p.Gly35Asp) single nucleotide variant Malignant melanoma [RCV000064041] Chr1:116754673 [GRCh38]
Chr1:117297295 [GRCh37]
Chr1:117098818 [NCBI36]
Chr1:1p13.1
not provided
NM_001767.3(CD2):c.964C>T (p.Gln322Ter) single nucleotide variant Malignant melanoma [RCV000064042] Chr1:116768691 [GRCh38]
Chr1:117311313 [GRCh37]
Chr1:117112836 [NCBI36]
Chr1:1p13.1
not provided
GRCh38/hg38 1p13.1-12(chr1:116752007-117309842)x3 copy number gain See cases [RCV000137829] Chr1:116752007..117309842 [GRCh38]
Chr1:117294629..117852464 [GRCh37]
Chr1:117096152..117653987 [NCBI36]
Chr1:1p13.1-12
uncertain significance
GRCh38/hg38 1p21.1-12(chr1:104325484-119977655)x3 copy number gain See cases [RCV000142953] Chr1:104325484..119977655 [GRCh38]
Chr1:104868106..120471049 [GRCh37]
Chr1:104669629..120321801 [NCBI36]
Chr1:1p21.1-12
pathogenic
NM_001767.5(CD2):c.974G>C (p.Gly325Ala) single nucleotide variant Malignant tumor of prostate [RCV000206020] Chr1:116768701 [GRCh38]
Chr1:117311323 [GRCh37]
Chr1:1p13.1
uncertain significance
GRCh37/hg19 1p13.2-12(chr1:114507501-120494232)x3 copy number gain See cases [RCV000449311] Chr1:114507501..120494232 [GRCh37]
Chr1:1p13.2-12
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p22.1-11.2(chr1:93837992-121343783)x3 copy number gain See cases [RCV000512354] Chr1:93837992..121343783 [GRCh37]
Chr1:1p22.1-11.2
pathogenic
GRCh37/hg19 1p13.1(chr1:117180331-117489298)x1 copy number loss not provided [RCV000684618] Chr1:117180331..117489298 [GRCh37]
Chr1:1p13.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
NM_001767.5(CD2):c.945G>A (p.Pro315=) single nucleotide variant not provided [RCV000974036] Chr1:116768672 [GRCh38]
Chr1:117311294 [GRCh37]
Chr1:1p13.1
benign
GRCh37/hg19 1p21.2-12(chr1:102021465-119737478) copy number loss Seizures [RCV001352640] Chr1:102021465..119737478 [GRCh37]
Chr1:1p21.2-12
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1639 AgrOrtholog
COSMIC CD2 COSMIC
Ensembl Genes ENSG00000116824 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000358489 UniProtKB/TrEMBL
  ENSP00000358490 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000369477 UniProtKB/TrEMBL
  ENST00000369478 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000116824 GTEx
HGNC ID HGNC:1639 ENTREZGENE
Human Proteome Map CD2 Human Proteome Map
InterPro CD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_C2-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:914 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 914 ENTREZGENE
OMIM 186990 OMIM
Pfam C2-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26198 PharmGKB
PRINTS CD2ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CD2_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q53F96 ENTREZGENE, UniProtKB/TrEMBL
  Q5JVN7_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q96TE5 UniProtKB/Swiss-Prot