Znf316 (zinc finger protein 316) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Znf316 (zinc finger protein 316) Chinchilla lanigera
Analyze
Symbol: Znf316
Name: zinc finger protein 316
RGD ID: 10284711
Description:
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,057,446 - 13,069,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,055,543 - 13,072,522 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf316
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,057,446 - 13,069,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,055,543 - 13,072,522 (-)NCBIChiLan1.0ChiLan1.0
ZNF316
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,637,318 - 6,658,279 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,637,318 - 6,658,279 (+)EnsemblGRCh38hg38GRCh38
GRCh3776,676,949 - 6,697,910 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,643,507 - 6,662,813 (+)NCBINCBI36Build 36hg18NCBI36
Celera76,040,937 - 6,053,642 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,549,296 - 6,569,726 (+)NCBIHuRef
CHM1_176,676,569 - 6,697,533 (+)NCBICHM1_1
T2T-CHM13v2.076,756,509 - 6,777,459 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,724,003 - 6,744,941 (+)NCBI
Zfp316
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,235,450 - 143,258,269 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,235,452 - 143,255,777 (-)EnsemblGRCm39 Ensembl
GRCm385143,249,695 - 143,270,031 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,249,697 - 143,270,022 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,011,374 - 144,031,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,516,861 - 143,535,079 (-)NCBIMGSCv36mm8
Celera5140,293,956 - 140,314,397 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.03NCBI
Zfp316
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,408,032 - 16,427,427 (+)NCBIGRCr8
mRatBN7.21211,294,445 - 11,313,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,293,980 - 11,312,177 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,102,388 - 12,121,585 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,725,675 - 12,744,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,751,774 - 11,770,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,346,414 - 13,367,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,353,750 - 13,364,338 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,394,008 - 15,407,698 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,660,257 - 11,673,946 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,690,678 - 11,701,297 (+)NCBI
Celera1213,093,084 - 13,106,763 (+)NCBICelera
Cytogenetic Map12p11NCBI
ZNF316
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,015,891 - 11,035,034 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,340,601 - 59,359,738 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,788,162 - 6,807,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,832,224 - 6,868,688 (+)NCBIpanpan1.1PanPan1.1panPan2
ZNF316
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,970,486 - 11,988,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,952,304 - 11,987,991 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,595,499 - 13,615,014 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,972,780 - 11,992,295 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,976,041 - 11,989,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,848,424 - 11,867,938 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,827,449 - 11,846,959 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,054,829 - 12,074,344 (+)NCBIUU_Cfam_GSD_1.0
Znf316
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,147,139 - 140,194,324 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765171,874 - 183,420 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765169,243 - 185,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF316
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,555,440 - 4,568,791 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,552,543 - 4,569,593 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23144,267,467 - 144,281,756 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF316
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,847,991 - 15,867,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,852,691 - 15,867,303 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102164,713 - 184,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf316
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,681,301 - 30,696,875 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,682,077 - 30,700,760 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000007166   ⟹   ENSCLAP00000007054
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546013,057,446 - 13,069,856 (-)Ensembl
RefSeq Acc Id: XM_013521264   ⟹   XP_013376718
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546013,055,543 - 13,072,522 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376718 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007054
  ENSCLAP00000007054.1
RefSeq Acc Id: XP_013376718   ⟸   XM_013521264
- UniProtKB: A0A8C2UXT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007054   ⟸   ENSCLAT00000007166
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007166 ENTREZGENE
  ENSCLAT00000007166.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf316 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 316 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2UXT6 ENTREZGENE, UniProtKB/TrEMBL