Calcr (calcitonin receptor) - Rat Genome Database

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Gene: Calcr (calcitonin receptor) Mus musculus
Analyze
Symbol: Calcr
Name: calcitonin receptor
RGD ID: 10276
MGI Page MGI
Description: Enables calcitonin receptor activity. Acts upstream of or within several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; negative regulation of ossification; and osteoclast differentiation. Located in acrosomal vesicle and cilium. Is expressed in several structures, including brain; gonad; limb long bone; mammary gland primordium; and sensory organ. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C; calcitonin receptor isoform Cla-2; calcitonin receptor isoform Clb-2; Clr; CT-R
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3963,685,678 - 3,764,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl63,685,680 - 3,764,714 (-)EnsemblGRCm39 Ensembl
GRCm3863,685,678 - 3,764,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl63,685,680 - 3,764,714 (-)EnsemblGRCm38mm10GRCm38
MGSCv3763,635,720 - 3,714,713 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3663,635,734 - 3,718,616 (-)NCBIMGSCv36mm8
Celera63,838,106 - 3,917,223 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adenylate cyclase-activating G protein-coupled receptor signaling pathway  (IBA,IDA,ISO)
adenylate cyclase-modulating G protein-coupled receptor signaling pathway  (ISO)
amylin receptor 1 signaling pathway  (IEA)
amylin receptor 2 signaling pathway  (IEA)
amylin receptor 3 signaling pathway  (IEA)
amylin receptor signaling pathway  (ISO)
calcitonin family receptor signaling pathway  (ISO)
calcitonin gene-related peptide receptor signaling pathway  (ISO)
cell surface receptor signaling pathway  (IEA)
cellular response to transforming growth factor beta stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
cross-receptor inhibition within G protein-coupled receptor heterodimer  (ISO)
mononuclear cell differentiation  (ISO)
negative regulation of ossification  (IMP)
ossification  (IMP)
osteoclast differentiation  (IDA)
positive regulation of adenylate cyclase activity  (ISO)
positive regulation of calcium-mediated signaling  (IEA,ISO)
positive regulation of cAMP/PKA signal transduction  (IEA)
positive regulation of cytosolic calcium ion concentration  (IBA,IDA,ISO)
positive regulation of ERK1 and ERK2 cascade  (IEA,ISO)
positive regulation of gene expression  (IEA,ISO)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IEA,ISO)
positive regulation of protein kinase A signaling  (ISO)
regulation of bone resorption  (IMP)
regulation of mRNA stability  (IDA)
response to amyloid-beta  (IEA,ISO)
response to glucocorticoid  (IEA,ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The calcitonin receptor gene is a candidate for regulation of susceptibility to herpes simplex type 1 neuronal infection leading to encephalitis in rat. Abdelmagid N, etal., PLoS Pathog. 2012;8(6):e1002753. doi: 10.1371/journal.ppat.1002753. Epub 2012 Jun 28.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Association between osteoporosis and polymorphisms of the bone Gla protein, estrogen receptor 1, collagen 1-A1 and calcitonin receptor genes in Turkish postmenopausal women. Tural S, etal., Gene. 2013 Feb 15;515(1):167-72. doi: 10.1016/j.gene.2012.10.041. Epub 2012 Nov 5.
10. Multiple mouse chromosomal loci for dynein-based motility. Vaughan KT, etal., Genomics 1996 Aug 15;36(1):29-38.
Additional References at PubMed
PMID:7664679   PMID:7747631   PMID:7988453   PMID:8661009   PMID:8992876   PMID:9002981   PMID:9753683   PMID:9886862   PMID:10349636   PMID:10757814   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:11309373   PMID:11832378   PMID:12236227   PMID:12477932   PMID:12704735   PMID:12730726   PMID:12897786   PMID:14715706   PMID:14970190   PMID:15194494   PMID:16141072  
PMID:16141073   PMID:16341224   PMID:16602821   PMID:17151281   PMID:18163532   PMID:18384073   PMID:18627265   PMID:20440000   PMID:20847738   PMID:20850575   PMID:20939024   PMID:21267068  
PMID:21491433   PMID:21677750   PMID:21873635   PMID:21989910   PMID:22271140   PMID:22315449   PMID:22562803   PMID:23226525   PMID:23895994   PMID:24952961   PMID:25010197   PMID:25333900  
PMID:25486133   PMID:26044139   PMID:26135836   PMID:26400621   PMID:26440893   PMID:26882873   PMID:27402918   PMID:28727763   PMID:29087309   PMID:29440246   PMID:29522093   PMID:29795344  
PMID:31202927   PMID:31420539   PMID:31747590   PMID:31955990   PMID:32152204   PMID:32180899   PMID:33149301   PMID:33278342   PMID:33295098   PMID:33638943   PMID:33834205   PMID:34077719  
PMID:34462445   PMID:34856120   PMID:35036874   PMID:35676482   PMID:35705049   PMID:36658598   PMID:38355793   PMID:38875306   PMID:39182194  


Genomics

Comparative Map Data
Calcr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3963,685,678 - 3,764,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl63,685,680 - 3,764,714 (-)EnsemblGRCm39 Ensembl
GRCm3863,685,678 - 3,764,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl63,685,680 - 3,764,714 (-)EnsemblGRCm38mm10GRCm38
MGSCv3763,635,720 - 3,714,713 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3663,635,734 - 3,718,616 (-)NCBIMGSCv36mm8
Celera63,838,106 - 3,917,223 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
CALCR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,424,486 - 93,574,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,424,486 - 93,574,730 (-)EnsemblGRCh38hg38GRCh38
GRCh37793,053,798 - 93,204,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36792,891,735 - 93,041,686 (-)NCBINCBI36Build 36hg18NCBI36
Build 34792,698,449 - 92,848,401NCBI
Celera787,758,299 - 87,908,414 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef787,664,656 - 87,814,674 (-)NCBIHuRef
CHM1_1792,983,802 - 93,134,094 (-)NCBICHM1_1
T2T-CHM13v2.0794,666,953 - 94,817,060 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,383,112 - 92,533,218 (-)NCBI
Calcr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8432,615,955 - 32,691,075 (-)NCBIGRCr8
mRatBN7.2431,661,270 - 31,736,392 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl431,661,273 - 31,736,392 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx436,633,979 - 36,709,091 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0432,560,089 - 32,635,205 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0430,919,584 - 30,995,051 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0428,627,439 - 28,702,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl428,627,442 - 28,702,559 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0428,532,077 - 28,607,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,486,176 - 28,561,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1428,501,581 - 28,574,979 (-)NCBI
Celera427,047,821 - 27,123,526 (-)NCBICelera
Cytogenetic Map4q13NCBI
Calcr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,309,263 - 10,391,141 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543210,310,776 - 10,391,029 (-)NCBIChiLan1.0ChiLan1.0
CALCR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26111,269,609 - 111,419,724 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17159,534,252 - 159,684,366 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,382,167 - 85,532,562 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1798,975,906 - 99,125,841 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl798,975,906 - 99,047,162 (-)Ensemblpanpan1.1panPan2
CALCR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,923,116 - 19,074,904 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1418,923,116 - 19,074,904 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1418,482,050 - 18,633,756 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01418,730,002 - 18,888,306 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1418,729,945 - 18,888,301 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,889,119 - 19,040,277 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01418,624,883 - 18,776,465 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01418,875,566 - 19,033,608 (-)NCBIUU_Cfam_GSD_1.0
Calcr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,331,279 - 32,443,389 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936803422,890 - 466,730 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936803423,558 - 466,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALCR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl973,279,879 - 73,403,436 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1973,279,874 - 73,403,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2980,112,418 - 80,234,372 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9q11-q12NCBI
CALCR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12155,433,438 - 55,585,608 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2155,523,412 - 55,583,735 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604248,721,181 - 48,873,559 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calcr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624813233,042 - 357,396 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624813233,117 - 357,507 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Calcr
3067 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2786
Count of miRNA genes:425
Interacting mature miRNAs:543
Transcripts:ENSMUST00000075644, ENSMUST00000115622, ENSMUST00000168592, ENSMUST00000170266, ENSMUST00000171396, ENSMUST00000171613
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse

Markers in Region
UniSTS:224970  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3863,724,148 - 3,724,306UniSTSGRCm38
MGSCv3763,674,148 - 3,674,306UniSTSGRCm37
Celera63,876,667 - 3,876,825UniSTS
Cytogenetic Map6A1UniSTS
cM Map63.8UniSTS
Calcr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3763,714,533 - 3,714,597UniSTSGRCm37
Celera63,917,043 - 3,917,107UniSTS
Cytogenetic Map6A1UniSTS
cM Map63.8UniSTS
Calcr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3863,764,533 - 3,764,597UniSTSGRCm38
MGSCv3763,714,533 - 3,714,597UniSTSGRCm37
Celera63,917,043 - 3,917,107UniSTS
Cytogenetic Map6A1UniSTS
Calcr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001377018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC066688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF056329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ057218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000075644   ⟹   ENSMUSP00000075070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl63,685,733 - 3,764,658 (-)Ensembl
GRCm38.p6 Ensembl63,685,733 - 3,764,658 (-)Ensembl
Ensembl Acc Id: ENSMUST00000115622   ⟹   ENSMUSP00000111285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl63,685,720 - 3,764,714 (-)Ensembl
GRCm38.p6 Ensembl63,685,720 - 3,764,714 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168592   ⟹   ENSMUSP00000130243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl63,686,822 - 3,752,974 (-)Ensembl
GRCm38.p6 Ensembl63,686,822 - 3,752,974 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170266   ⟹   ENSMUSP00000132124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl63,686,822 - 3,752,974 (-)Ensembl
GRCm38.p6 Ensembl63,686,822 - 3,752,974 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171613   ⟹   ENSMUSP00000130083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl63,685,680 - 3,763,630 (-)Ensembl
GRCm38.p6 Ensembl63,685,680 - 3,763,630 (-)Ensembl
RefSeq Acc Id: NM_001042725   ⟹   NP_001036190
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3963,685,720 - 3,763,623 (-)NCBI
GRCm3863,685,720 - 3,763,623 (-)NCBI
MGSCv3763,635,720 - 3,714,713 (-)RGD
Celera63,838,106 - 3,917,223 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355192   ⟹   NP_001342121
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3963,685,680 - 3,764,713 (-)NCBI
GRCm3863,685,680 - 3,764,713 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377018   ⟹   NP_001363947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3963,685,678 - 3,763,623 (-)NCBI
GRCm3863,685,678 - 3,763,623 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007588   ⟹   NP_031614
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3963,685,720 - 3,764,713 (-)NCBI
GRCm3863,685,720 - 3,764,713 (-)NCBI
MGSCv3763,635,720 - 3,714,713 (-)RGD
Celera63,838,106 - 3,917,223 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031614   ⟸   NM_007588
- Peptide Label: isoform 1b precursor
- UniProtKB: Q3UUL9 (UniProtKB/Swiss-Prot),   F6X7J4 (UniProtKB/Swiss-Prot),   Q8CAB0 (UniProtKB/Swiss-Prot),   Q60755 (UniProtKB/Swiss-Prot),   Q924D7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001036190   ⟸   NM_001042725
- Peptide Label: isoform 1a precursor
- UniProtKB: Q924D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342121   ⟸   NM_001355192
- Peptide Label: isoform 1a precursor
- UniProtKB: Q924D6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001363947   ⟸   NM_001377018
- Peptide Label: isoform 1b precursor
- UniProtKB: Q60755 (UniProtKB/Swiss-Prot),   Q3UUL9 (UniProtKB/Swiss-Prot),   F6X7J4 (UniProtKB/Swiss-Prot),   Q8CAB0 (UniProtKB/Swiss-Prot),   Q924D7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000132124   ⟸   ENSMUST00000170266
Ensembl Acc Id: ENSMUSP00000130083   ⟸   ENSMUST00000171613
Ensembl Acc Id: ENSMUSP00000130243   ⟸   ENSMUST00000168592
Ensembl Acc Id: ENSMUSP00000111285   ⟸   ENSMUST00000115622
Ensembl Acc Id: ENSMUSP00000075070   ⟸   ENSMUST00000075644
Protein Domains
G-protein coupled receptors family 2 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60755-F1-model_v2 AlphaFold Q60755 1-533 view protein structure

Promoters
RGD ID:6888920
Promoter ID:EPDNEW_M7911
Type:single initiation site
Name:Calcr_1
Description:Mus musculus calcitonin receptor , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3863,763,623 - 3,763,683EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101950 AgrOrtholog
Ensembl Genes ENSMUSG00000023964 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000075644 ENTREZGENE
  ENSMUST00000075644.13 UniProtKB/Swiss-Prot
  ENSMUST00000115622 ENTREZGENE
  ENSMUST00000115622.8 UniProtKB/Swiss-Prot
  ENSMUST00000168592.9 UniProtKB/Swiss-Prot
  ENSMUST00000170266 ENTREZGENE
  ENSMUST00000170266.3 UniProtKB/Swiss-Prot
  ENSMUST00000171613 ENTREZGENE
  ENSMUST00000171613.8 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.1240.10 UniProtKB/Swiss-Prot
  Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GCPR_2_calcitonin_rcpt_fam UniProtKB/Swiss-Prot
  GPCR_2 UniProtKB/Swiss-Prot
  GPCR_2-like UniProtKB/Swiss-Prot
  GPCR_2_calcitonin_rcpt UniProtKB/Swiss-Prot
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot
  GPCR_2_secretin-like UniProtKB/Swiss-Prot
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot
KEGG Report mmu:12311 UniProtKB/Swiss-Prot
MGD MGI:101950 ENTREZGENE
NCBI Gene 12311 ENTREZGENE
PANTHER PDF RECEPTOR-LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot
  PTHR45620:SF8 UniProtKB/Swiss-Prot
Pfam 7tm_2 UniProtKB/Swiss-Prot
  HRM UniProtKB/Swiss-Prot
PhenoGen Calcr PhenoGen
PRINTS CALCITONINR UniProtKB/Swiss-Prot
  CTRFAMILY UniProtKB/Swiss-Prot
  GPCRSECRETIN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_2 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot
SMART HormR UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
  SSF111418 UniProtKB/Swiss-Prot
UniProt CALCR_MOUSE UniProtKB/Swiss-Prot
  F6X7J4 ENTREZGENE
  O70440_MOUSE UniProtKB/TrEMBL
  Q3UUL9 ENTREZGENE
  Q60755 ENTREZGENE
  Q8CAB0 ENTREZGENE
  Q924D6 ENTREZGENE, UniProtKB/TrEMBL
  Q924D7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F6X7J4 UniProtKB/Swiss-Prot
  Q3UUL9 UniProtKB/Swiss-Prot
  Q8CAB0 UniProtKB/Swiss-Prot