Cacna2d1 (calcium channel, voltage-dependent, alpha2/delta subunit 1) - Rat Genome Database
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Gene: Cacna2d1 (calcium channel, voltage-dependent, alpha2/delta subunit 1) Mus musculus
Analyze
Symbol: Cacna2d1
Name: calcium channel, voltage-dependent, alpha2/delta subunit 1
RGD ID: 10269
MGI Page MGI
Description: Predicted to contribute to voltage-gated calcium channel activity involved in bundle of His cell action potential. Involved in regulation of calcium ion transport. Localizes to T-tubule and sarcoplasmic reticulum. Is expressed in several structures, including central nervous system; heart ventricle; skeletal musculature; trigeminal nerve; and urinary system. Orthologous to human CACNA2D1 (calcium voltage-gated channel auxiliary subunit alpha2delta 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: Ca(v)alpha2delta1; Cac; Cacna2; Cchl; Cchl2a; dihydropyridine-sensitive calcium channel alpha 2; MGC141430; voltage-dependent calcium channel alpha2/delta-1; voltage-dependent calcium channel subunit alpha-2/delta-1; voltage-gated calcium channel subunit alpha-2/delta-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39516,139,390 - 16,579,509 (+)NCBIGRCm39mm39
GRCm38515,934,264 - 16,374,511 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl515,934,691 - 16,374,511 (+)EnsemblGRCm38mm10GRCm38
MGSCv37515,440,509 - 15,880,329 (+)NCBIGRCm37mm9NCBIm37
MGSCv36515,446,612 - 15,882,875 (+)NCBImm8
Celera512,936,968 - 13,372,202 (+)NCBICelera
Cytogenetic Map5A2- A3NCBI
cM Map56.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-acetamidofluorene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
amitriptyline  (ISO)
ammonium chloride  (ISO)
androgen antagonist  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
barium(0)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
butanal  (ISO)
Butylparaben  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzacamene  (ISO)
ethanol  (EXP,ISO)
flavonoids  (ISO)
folic acid  (EXP)
furan  (ISO)
gabapentin  (EXP,ISO)
homocysteine  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP)
methamphetamine  (EXP)
N-nitrosodiethylamine  (ISO)
nicotine  (EXP)
nitrogen dioxide  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
paclitaxel  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
PhIP  (ISO)
potassium chloride  (EXP)
potassium chromate  (ISO)
pregabalin  (EXP,ISO)
progesterone  (EXP)
resveratrol  (EXP)
SB 431542  (ISO)
SCH 23390  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sodium nitrate  (EXP)
sulpiride  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
tetracycline  (EXP)
thapsigargin  (EXP)
trichostatin A  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:1324224   PMID:1847144   PMID:7851897   PMID:7894155   PMID:8499659   PMID:8955374   PMID:10349636   PMID:10843805   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479  
PMID:15142957   PMID:15536090   PMID:16141072   PMID:16141073   PMID:16460711   PMID:16602821   PMID:16764990   PMID:16923961   PMID:16985003   PMID:17031067   PMID:17064682   PMID:17088553  
PMID:17500595   PMID:17917366   PMID:17949410   PMID:18055048   PMID:18063658   PMID:18287559   PMID:19216737   PMID:19429829   PMID:19596051   PMID:19818485   PMID:20080692   PMID:20188150  
PMID:20579869   PMID:21157120   PMID:21182903   PMID:21267068   PMID:21490313   PMID:21558437   PMID:21638318   PMID:21677750   PMID:21862448   PMID:21873635   PMID:22534482   PMID:22542184  
PMID:22805911   PMID:22849384   PMID:23296739   PMID:24133248   PMID:24151064   PMID:24403154   PMID:24453333   PMID:24658003   PMID:24889613   PMID:24952961   PMID:27129212   PMID:27231153  
PMID:28115397   PMID:28193459   PMID:28646556   PMID:28671696   PMID:28826478   PMID:29109971   PMID:29176626   PMID:29212022   PMID:29288665   PMID:29466724   PMID:29490268   PMID:29921713  
PMID:30054448   PMID:30355732   PMID:30431158   PMID:30683685   PMID:31040226   PMID:31073041   PMID:32269108   PMID:32274496   PMID:32325033   PMID:32337532   PMID:32414783   PMID:32616470  


Genomics

Comparative Map Data
Cacna2d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39516,139,390 - 16,579,509 (+)NCBIGRCm39mm39
GRCm38515,934,264 - 16,374,511 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl515,934,691 - 16,374,511 (+)EnsemblGRCm38mm10GRCm38
MGSCv37515,440,509 - 15,880,329 (+)NCBIGRCm37mm9NCBIm37
MGSCv36515,446,612 - 15,882,875 (+)NCBImm8
Celera512,936,968 - 13,372,202 (+)NCBICelera
Cytogenetic Map5A2- A3NCBI
cM Map56.56NCBI
CACNA2D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl781,946,444 - 82,443,777 (-)EnsemblGRCh38hg38GRCh38
GRCh38781,946,444 - 82,443,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37781,575,760 - 82,073,031 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37781,575,760 - 82,073,272 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36781,417,354 - 81,910,967 (-)NCBINCBI36hg18NCBI36
Build 34781,224,068 - 81,717,682NCBI
Celera776,279,569 - 76,773,517 (-)NCBI
Cytogenetic Map7q21.11NCBI
HuRef776,182,274 - 76,676,613 (-)NCBIHuRef
CHM1_1781,505,845 - 82,003,170 (-)NCBICHM1_1
CRA_TCAGchr7v2780,910,288 - 81,405,123 (-)NCBI
Cacna2d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2418,950,611 - 19,374,969 (-)NCBI
Rnor_6.0 Ensembl415,710,417 - 16,130,848 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0415,706,974 - 16,130,848 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0415,681,399 - 16,105,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4415,139,881 - 15,566,740 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1415,169,848 - 15,566,733 (-)NCBI
Celera414,480,196 - 14,898,934 (-)NCBICelera
Cytogenetic Map4q12NCBI
Cacna2d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554103,619,740 - 3,964,239 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554103,544,398 - 3,963,582 (+)NCBIChiLan1.0ChiLan1.0
CACNA2D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1787,575,054 - 88,068,480 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl787,579,004 - 88,068,482 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0773,917,439 - 74,410,627 (-)NCBIMhudiblu_PPA_v0panPan3
CACNA2D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1821,564,676 - 21,949,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11821,561,091 - 21,949,970 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cacna2d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936734577,656 - 1,027,412 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA2D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl997,780,742 - 98,266,573 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1997,781,057 - 98,265,925 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29108,068,038 - 108,554,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA2D1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12166,449,154 - 66,937,643 (+)NCBI
ChlSab1.1 Ensembl2166,770,578 - 66,934,898 (+)Ensembl
Cacna2d1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473930,436,662 - 30,864,482 (-)NCBI

Position Markers
D5Mit226  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38516,010,646 - 16,010,769UniSTSGRCm38
MGSCv37515,516,464 - 15,516,587UniSTSGRCm37
Celera513,012,725 - 13,012,848UniSTS
Cytogenetic Map5A2UniSTS
cM Map55.0UniSTS
Whitehead Genetic53.3UniSTS
Whitehead/MRC_RH5171.38UniSTS
Whitehead_YAC5 UniSTS
U73483  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38516,370,752 - 16,370,861UniSTSGRCm38
MGSCv37515,876,570 - 15,876,679UniSTSGRCm37
Celera513,368,443 - 13,368,552UniSTS
Cytogenetic Map5A2UniSTS
cM Map54.0UniSTS
Whitehead/MRC_RH5173.11UniSTS
Whitehead/MRC_RH5167.4UniSTS
UniSTS:235132  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38515,963,208 - 15,963,529UniSTSGRCm38
MGSCv37515,469,026 - 15,469,347UniSTSGRCm37
Celera512,965,433 - 12,965,754UniSTS
Cytogenetic Map5A2UniSTS
cM Map54.0UniSTS
RH126132  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38516,340,461 - 16,340,671UniSTSGRCm38
MGSCv37515,846,279 - 15,846,489UniSTSGRCm37
Celera513,338,182 - 13,338,392UniSTS
Cytogenetic Map5A2UniSTS
cM Map54.0UniSTS
Whitehead/MRC_RH5172.6UniSTS
Cacna2d1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38516,370,840 - 16,371,003UniSTSGRCm38
MGSCv37515,876,658 - 15,876,821UniSTSGRCm37
Celera513,368,531 - 13,368,694UniSTS
Cytogenetic Map5A2UniSTS
cM Map54.0UniSTS
Cacna2d1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5A2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141234Pbwg14_mpostnatal body weight growth 14 (mouse)Not determined5121223552Mouse
1301468Eye1_meye weight 1 (mouse)Not determined5121879650Mouse
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123556323Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129371157Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined561814634618282Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5329982537299825Mouse
13442491Mecth1_mmechanosensation threshold 1 (mouse)5446800019630000Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5517952239179654Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5791911941919241Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5879767233318293Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5884069387693978Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5886594940372526Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51340580847405808Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51547674049476846Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6062
Count of miRNA genes:632
Interacting mature miRNAs:799
Transcripts:ENSMUST00000039370, ENSMUST00000078272, ENSMUST00000101581, ENSMUST00000115281, ENSMUST00000167946, ENSMUST00000180204
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001110846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC168850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC169383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK327276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039370   ⟹   ENSMUSP00000049457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,788 - 16,371,069 (+)Ensembl
RefSeq Acc Id: ENSMUST00000078272   ⟹   ENSMUSP00000077391
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,788 - 16,374,504 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101581   ⟹   ENSMUSP00000099117
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,788 - 16,371,051 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115281   ⟹   ENSMUSP00000110936
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,829 - 16,370,727 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167946   ⟹   ENSMUSP00000131507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,691 - 16,374,511 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180204   ⟹   ENSMUSP00000136260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,788 - 16,371,069 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196750   ⟹   ENSMUSP00000143082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,911 - 16,089,022 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199236
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl516,361,395 - 16,362,326 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199704   ⟹   ENSMUSP00000142881
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl515,934,788 - 16,371,069 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200158
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl516,325,985 - 16,329,883 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200270
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl516,025,714 - 16,268,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl516,326,151 - 16,341,059 (+)Ensembl
RefSeq Acc Id: NM_001110843   ⟹   NP_001104313
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,689 - 16,579,509 (+)NCBI
GRCm38515,934,691 - 16,374,511 (+)ENTREZGENE
MGSCv37515,440,509 - 15,880,329 (+)RGD
Celera512,936,968 - 13,372,202 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110844   ⟹   NP_001104314
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,689 - 16,579,509 (+)NCBI
GRCm38515,934,691 - 16,374,511 (+)ENTREZGENE
MGSCv37515,440,509 - 15,880,329 (+)RGD
Celera512,936,968 - 13,372,202 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110845   ⟹   NP_001104315
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,689 - 16,579,509 (+)NCBI
GRCm38515,934,691 - 16,374,511 (+)ENTREZGENE
MGSCv37515,440,509 - 15,880,329 (+)RGD
Celera512,936,968 - 13,372,202 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001110846   ⟹   NP_001104316
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,689 - 16,579,509 (+)NCBI
GRCm38515,934,691 - 16,374,511 (+)ENTREZGENE
MGSCv37515,440,509 - 15,880,329 (+)RGD
Celera512,936,968 - 13,372,202 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009784   ⟹   NP_033914
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,689 - 16,579,509 (+)NCBI
GRCm38515,934,691 - 16,374,511 (+)ENTREZGENE
MGSCv37515,440,509 - 15,880,329 (+)RGD
Celera512,936,968 - 13,372,202 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535618   ⟹   XP_006535681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,451,664 - 16,579,503 (+)NCBI
GRCm38516,246,666 - 16,374,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535619   ⟹   XP_006535682
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,682 - 16,531,380 (+)NCBI
GRCm38515,934,264 - 16,326,382 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249741   ⟹   XP_011248043
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,390 - 16,488,727 (+)NCBI
GRCm38515,934,264 - 16,283,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249743   ⟹   XP_011248045
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,390 - 16,501,142 (+)NCBI
GRCm38515,934,264 - 16,284,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249744   ⟹   XP_011248046
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,682 - 16,579,503 (+)NCBI
GRCm38515,934,264 - 16,374,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320631   ⟹   XP_017176120
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,525,082 - 16,579,503 (+)NCBI
GRCm38516,320,084 - 16,374,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164761   ⟹   XP_036020654
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39516,139,390 - 16,501,142 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001104313 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104314 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104315 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104316 (Get FASTA)   NCBI Sequence Viewer  
  NP_033914 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535681 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535682 (Get FASTA)   NCBI Sequence Viewer  
  XP_011248043 (Get FASTA)   NCBI Sequence Viewer  
  XP_011248045 (Get FASTA)   NCBI Sequence Viewer  
  XP_011248046 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176120 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020654 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB50138 (Get FASTA)   NCBI Sequence Viewer  
  AAB50139 (Get FASTA)   NCBI Sequence Viewer  
  AAB50140 (Get FASTA)   NCBI Sequence Viewer  
  AAB50141 (Get FASTA)   NCBI Sequence Viewer  
  AAB50142 (Get FASTA)   NCBI Sequence Viewer  
  AAI15872 (Get FASTA)   NCBI Sequence Viewer  
  BAC35195 (Get FASTA)   NCBI Sequence Viewer  
  BAE37454 (Get FASTA)   NCBI Sequence Viewer  
  EDL03241 (Get FASTA)   NCBI Sequence Viewer  
  EDL03242 (Get FASTA)   NCBI Sequence Viewer  
  EDL03243 (Get FASTA)   NCBI Sequence Viewer  
  EDL03244 (Get FASTA)   NCBI Sequence Viewer  
  EDL03245 (Get FASTA)   NCBI Sequence Viewer  
  O08532 (Get FASTA)   NCBI Sequence Viewer  
  QAX24912 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_033914   ⟸   NM_009784
- Peptide Label: isoform e preproprotein
- UniProtKB: O08532 (UniProtKB/Swiss-Prot),   Q14BH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104313   ⟸   NM_001110843
- Peptide Label: isoform a preproprotein
- UniProtKB: O08532 (UniProtKB/Swiss-Prot),   Q14BH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104314   ⟸   NM_001110844
- Peptide Label: isoform b preproprotein
- UniProtKB: O08532 (UniProtKB/Swiss-Prot),   Q14BH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104315   ⟸   NM_001110845
- Peptide Label: isoform c preproprotein
- UniProtKB: O08532 (UniProtKB/Swiss-Prot),   Q14BH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104316   ⟸   NM_001110846
- Peptide Label: isoform d preproprotein
- UniProtKB: O08532 (UniProtKB/Swiss-Prot),   Q14BH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535682   ⟸   XM_006535619
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006535681   ⟸   XM_006535618
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011248046   ⟸   XM_011249744
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011248045   ⟸   XM_011249743
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011248043   ⟸   XM_011249741
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017176120   ⟸   XM_017320631
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000142881   ⟸   ENSMUST00000199704
RefSeq Acc Id: ENSMUSP00000099117   ⟸   ENSMUST00000101581
RefSeq Acc Id: ENSMUSP00000110936   ⟸   ENSMUST00000115281
RefSeq Acc Id: ENSMUSP00000131507   ⟸   ENSMUST00000167946
RefSeq Acc Id: ENSMUSP00000049457   ⟸   ENSMUST00000039370
RefSeq Acc Id: ENSMUSP00000143082   ⟸   ENSMUST00000196750
RefSeq Acc Id: ENSMUSP00000077391   ⟸   ENSMUST00000078272
RefSeq Acc Id: ENSMUSP00000136260   ⟸   ENSMUST00000180204
RefSeq Acc Id: XP_036020654   ⟸   XM_036164761
- Peptide Label: isoform X6
Protein Domains
Cache   VWFA

Promoters
RGD ID:6837210
Promoter ID:MM_KWN:41435
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   MEF_B4
Transcripts:NM_001110843,   NM_001110844,   NM_001110845,   NM_001110846,   NM_009784,   UC008WMW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36515,440,186 - 15,440,686 (+)MPROMDB
RGD ID:6886024
Promoter ID:EPDNEW_M6463
Type:initiation region
Name:Cacna2d1_1
Description:Mus musculus calcium channel, voltage-dependent, alpha2/deltasubunit 1 , transcript variant e, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38515,934,739 - 15,934,799EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88295 AgrOrtholog
Ensembl Genes ENSMUSG00000040118 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000049457 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000077391 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099117 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000110936 UniProtKB/Swiss-Prot
  ENSMUSP00000131507 UniProtKB/TrEMBL
  ENSMUSP00000136260 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142881 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143082 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039370 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000078272 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000101581 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000115281 UniProtKB/Swiss-Prot
  ENSMUST00000167946 UniProtKB/TrEMBL
  ENSMUST00000180204 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000196750 UniProtKB/TrEMBL
  ENSMUST00000199704 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro VDCC_a2/dsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12293 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88295 ENTREZGENE
NCBI Gene 12293 ENTREZGENE
Pfam VGCC_alpha2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacna2d1 PhenoGen
PROSITE VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A411ACY8_MOUSE UniProtKB/TrEMBL
  CA2D1_MOUSE UniProtKB/Swiss-Prot
  E9Q1X8_MOUSE UniProtKB/TrEMBL
  O08532 ENTREZGENE
  Q14BH8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQD0_MOUSE UniProtKB/TrEMBL
  Q8C6Y3_MOUSE UniProtKB/TrEMBL
UniProt Secondary O08533 UniProtKB/Swiss-Prot
  O08534 UniProtKB/Swiss-Prot
  O08535 UniProtKB/Swiss-Prot
  O08536 UniProtKB/Swiss-Prot