Bsn (bassoon) - Rat Genome Database

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Gene: Bsn (bassoon) Mus musculus
Analyze
Symbol: Bsn
Name: bassoon
RGD ID: 10251
MGI Page MGI
Description: A structural constituent of presynaptic active zone. Involved in several processes, including presynapse to nucleus signaling pathway; regulation of synaptic vesicle cycle; and synaptic vesicle clustering. Acts upstream of or within maintenance of presynaptic active zone structure. Located in several cellular components, including cell surface; postsynaptic density; and presynaptic active zone cytoplasmic component. Is active in several cellular components, including GABA-ergic synapse; Schaffer collateral - CA1 synapse; and cochlear hair cell ribbon synapse. Is expressed in nervous system and retina. Used to study epilepsy. Orthologous to human BSN (bassoon presynaptic cytomatrix protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: presynaptic cytomatrix protein; protein bassoon
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,973,221 - 108,067,618 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,973,221 - 108,067,583 (-)EnsemblGRCm39 Ensembl
GRCm389108,096,022 - 108,190,419 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,096,022 - 108,190,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,998,353 - 108,092,714 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,961,291 - 108,048,359 (-)NCBIMGSCv36mm8
Celera9107,705,791 - 107,798,925 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional inactivation of a fraction of excitatory synapses in mice deficient for the active zone protein bassoon. Altrock WD, etal., Neuron 2003 Mar 6;37(5):787-800.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Fv2 encodes a truncated form of the Stk receptor tyrosine kinase. Persons DA, etal., Nat Genet 1999 Oct;23(2):159-65.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Bassoon, a novel zinc-finger CAG/glutamine-repeat protein selectively localized at the active zone of presynaptic nerve terminals. tom Dieck S, etal., J Cell Biol 1998 Jul 27;142(2):499-509.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10862698   PMID:10900017   PMID:11042159   PMID:11076861   PMID:12115694   PMID:12477932   PMID:12628168   PMID:14610273   PMID:14621295   PMID:14622577  
PMID:15226823   PMID:15572359   PMID:15728193   PMID:15829963   PMID:15911881   PMID:15935055   PMID:15978582   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16452088   PMID:16452644  
PMID:16602821   PMID:16672052   PMID:17114649   PMID:17652465   PMID:17869247   PMID:17967808   PMID:17970721   PMID:18095322   PMID:18353676   PMID:18641643   PMID:18799693   PMID:18952919  
PMID:19000899   PMID:19029045   PMID:19081073   PMID:19453636   PMID:19812333   PMID:19837175   PMID:19966281   PMID:20074705   PMID:20188438   PMID:20332206   PMID:20421286   PMID:20519533  
PMID:20624980   PMID:21092860   PMID:21092861   PMID:21144999   PMID:21228161   PMID:21267068   PMID:21356198   PMID:21677750   PMID:21873635   PMID:21935677   PMID:21935939   PMID:21940441  
PMID:22357843   PMID:22412021   PMID:22457515   PMID:22764252   PMID:22794259   PMID:22884324   PMID:22933801   PMID:23217150   PMID:23295987   PMID:23403927   PMID:23467361   PMID:23516560  
PMID:23791195   PMID:23926259   PMID:24442635   PMID:24442636   PMID:24554721   PMID:24616664   PMID:24698275   PMID:24858730   PMID:25228773   PMID:25461618   PMID:25652077   PMID:25709106  
PMID:25915474   PMID:26793095   PMID:27321892   PMID:28231469   PMID:28386022   PMID:28634551   PMID:28671696   PMID:29518331   PMID:29915867   PMID:30562941   PMID:31011226   PMID:31493975  
PMID:31787876   PMID:32071204   PMID:32325033   PMID:32364493   PMID:32554809   PMID:32651614   PMID:32718208   PMID:33230847   PMID:33378226   PMID:33601422   PMID:33811381   PMID:34320240  
PMID:34321999   PMID:34360710   PMID:34474245   PMID:34867184   PMID:35179492   PMID:35766170   PMID:36417873   PMID:37269288   PMID:37532091  


Genomics

Comparative Map Data
Bsn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,973,221 - 108,067,618 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,973,221 - 108,067,583 (-)EnsemblGRCm39 Ensembl
GRCm389108,096,022 - 108,190,419 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,096,022 - 108,190,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,998,353 - 108,092,714 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,961,291 - 108,048,359 (-)NCBIMGSCv36mm8
Celera9107,705,791 - 107,798,925 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
BSN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,554,477 - 49,673,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,554,477 - 49,671,549 (+)EnsemblGRCh38hg38GRCh38
GRCh37349,591,910 - 49,708,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,566,926 - 49,683,986 (+)NCBINCBI36Build 36hg18NCBI36
Build 34349,566,925 - 49,683,980NCBI
Celera349,556,534 - 49,673,679 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,651,449 - 49,767,966 (+)NCBIHuRef
CHM1_1349,544,319 - 49,661,041 (+)NCBICHM1_1
T2T-CHM13v2.0349,583,475 - 49,700,809 (+)NCBIT2T-CHM13v2.0
Bsn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,663,447 - 117,754,412 (-)NCBIGRCr8
mRatBN7.28108,784,849 - 108,875,819 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,788,542 - 108,875,819 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,411,051 - 114,502,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,610,375 - 112,701,351 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,453,016 - 110,543,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,873,721 - 116,965,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,873,721 - 116,965,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,227,802 - 116,319,071 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,364,208 - 113,455,766 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,387,192 - 113,475,221 (-)NCBI
Celera8108,089,061 - 108,180,178 (-)NCBICelera
Cytogenetic Map8q32NCBI
Bsn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,527,477 - 1,570,670 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,527,336 - 1,578,394 (+)NCBIChiLan1.0ChiLan1.0
BSN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,537,981 - 49,653,399 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,542,626 - 49,663,680 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,483,652 - 49,603,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,729,927 - 50,841,178 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,790,552 - 50,841,178 (+)Ensemblpanpan1.1panPan2
BSN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,601,803 - 39,696,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,605,117 - 39,642,298 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,519,615 - 39,562,116 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,956,213 - 39,998,718 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,956,214 - 40,053,096 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,323,297 - 39,368,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,726,652 - 39,770,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,006,478 - 40,050,065 (-)NCBIUU_Cfam_GSD_1.0
Bsn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,422,347 - 64,527,292 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,182,810 - 1,280,657 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,182,872 - 1,287,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,159,630 - 32,195,578 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,106,967 - 32,203,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,341,713 - 35,382,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BSN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,953,901 - 11,066,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,018,966 - 11,059,701 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,934,160 - 156,048,808 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bsn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,498,257 - 3,593,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,498,118 - 3,600,488 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bsn
2138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2685
Count of miRNA genes:608
Interacting mature miRNAs:724
Transcripts:ENSMUST00000035208, ENSMUST00000124763
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse

Markers in Region
25.mHAa8b1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,176,112 - 108,176,215UniSTSGRCm38
MGSCv379108,078,443 - 108,078,546UniSTSGRCm37
Celera9107,784,758 - 107,784,861UniSTS
Cytogenetic Map9FUniSTS
cM Map960.0UniSTS
Whitehead_YAC9 UniSTS
D9Dcr107  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,146,410 - 108,146,504UniSTSGRCm38
MGSCv379108,048,741 - 108,048,835UniSTSGRCm37
Celera9107,756,122 - 107,756,216UniSTS
Cytogenetic Map9FUniSTS
cM Map9 UniSTS
D9Dcr108  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,156,038 - 108,156,145UniSTSGRCm38
MGSCv379108,058,369 - 108,058,476UniSTSGRCm37
Celera9107,764,496 - 107,764,603UniSTS
Cytogenetic Map9FUniSTS
cM Map9 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC137678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC168217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI836567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY742476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035208   ⟹   ENSMUSP00000035208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,973,221 - 108,067,583 (-)Ensembl
GRCm38.p6 Ensembl9108,096,022 - 108,190,384 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124763   ⟹   ENSMUSP00000139053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9107,973,222 - 107,987,612 (-)Ensembl
GRCm38.p6 Ensembl9108,096,023 - 108,110,413 (-)Ensembl
RefSeq Acc Id: NM_007567   ⟹   NP_031593
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,973,221 - 108,067,582 (-)NCBI
GRCm389108,096,022 - 108,190,383 (-)NCBI
MGSCv379107,998,353 - 108,092,714 (-)RGD
Celera9107,705,791 - 107,798,925 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511634   ⟹   XP_006511697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,973,226 - 108,067,618 (-)NCBI
GRCm389108,096,027 - 108,190,419 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031593   ⟸   NM_007567
- UniProtKB: E9QMZ3 (UniProtKB/Swiss-Prot),   Q6ZQB5 (UniProtKB/Swiss-Prot),   O88737 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511697   ⟸   XM_006511634
- Peptide Label: isoform X1
- UniProtKB: E9QMZ3 (UniProtKB/Swiss-Prot),   Q6ZQB5 (UniProtKB/Swiss-Prot),   O88737 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139053   ⟸   ENSMUST00000124763
RefSeq Acc Id: ENSMUSP00000035208   ⟸   ENSMUST00000035208

Promoters
RGD ID:6844256
Promoter ID:MM_KWN:58778
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:OTTMUST00000041007
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,012,861 - 108,013,692 (-)MPROMDB
RGD ID:6844255
Promoter ID:MM_KWN:58781
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000041006
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,092,541 - 108,093,041 (-)MPROMDB
RGD ID:8670866
Promoter ID:EPDNEW_M13464
Type:initiation region
Name:Bsn_1
Description:Mus musculus bassoon , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,190,384 - 108,190,444EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277955 AgrOrtholog
Ensembl Genes ENSMUSG00000032589 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035208 ENTREZGENE
  ENSMUST00000035208.14 UniProtKB/Swiss-Prot
  ENSMUST00000124763.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
InterPro Bsn UniProtKB/Swiss-Prot
  Znf_FYVE_PHD UniProtKB/Swiss-Prot
  Znf_piccolo UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report mmu:12217 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1277955 ENTREZGENE
NCBI Gene 12217 ENTREZGENE
PANTHER PICCOLO/BASSOON UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14113:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-piccolo UniProtKB/Swiss-Prot
PhenoGen Bsn PhenoGen
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot
UniProt BSN_MOUSE UniProtKB/Swiss-Prot
  E9QMZ3 ENTREZGENE
  O88737 ENTREZGENE
  Q3TUN1_MOUSE UniProtKB/TrEMBL
  Q3UXD6_MOUSE UniProtKB/TrEMBL
  Q6ZQB5 ENTREZGENE
  V9GX98_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QMZ3 UniProtKB/Swiss-Prot
  Q6ZQB5 UniProtKB/Swiss-Prot