Atp1b2 (ATPase, Na+/K+ transporting, beta 2 polypeptide) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Atp1b2 (ATPase, Na+/K+ transporting, beta 2 polypeptide) Mus musculus
Analyze
Symbol: Atp1b2
Name: ATPase, Na+/K+ transporting, beta 2 polypeptide
RGD ID: 10208
MGI Page MGI
Description: Predicted to enable several functions, including ATPase binding activity; P-type sodium:potassium-exchanging transporter activity; and protein heterodimerization activity. Involved in cell-substrate adhesion; negative regulation of glial cell migration; and positive regulation of neuron projection development. Acts upstream of or within several processes, including brain development; motor behavior; and photoreceptor cell maintenance. Located in several cellular components, including astrocyte end-foot; cell body membrane; and photoreceptor inner segment. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; liver; and retina. Orthologous to human ATP1B2 (ATPase Na+/K+ transporting subunit beta 2); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; alfentanil pharmacodynamics pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2-butoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: adhesion molecule in glia; Am; Amog; Atpb; Atpb-2; glial cell adhesion molecule; snoRNA MBI-85; sodium/potassium-dependent ATPase subunit beta-2; sodium/potassium-transporting ATPase subunit beta-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,490,554 - 69,496,786 (-)NCBIGRCm39mm39
GRCm39 Ensembl1169,490,562 - 69,496,768 (-)Ensembl
GRCm381169,599,728 - 69,605,978 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,599,736 - 69,605,942 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,413,252 - 69,419,462 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,415,948 - 69,422,024 (-)NCBImm8
Celera1176,563,216 - 76,569,425 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
aldosterone signaling pathway  (IEA)
alfentanil pharmacodynamics pathway  (ISO)
amiloride pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
bendroflumethiazide pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bile acid transport pathway  (IEA)
bisoprolol pharmacodynamics pathway  (ISO)
bumetanide pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
chlorothiazide pharmacodynamics pathway  (ISO)
chlorthalidone pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
cystinuria pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
eplerenone pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
etacrynic acid pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
furosemide pharmacodynamics pathway  (ISO)
Hartnup disease pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrochlorothiazide pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydroflumethiazide pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
iminoglycinuria pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
lactose degradation pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
lysinuric protein intolerance pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
metolazone pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
spironolactone pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
torasemide pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)
trehalose degradation pathway  (ISO)
triamterene pharmacodynamics pathway  (ISO)
trichlormethiazide pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References

Additional References at PubMed
PMID:1663071   PMID:1688561   PMID:1699290   PMID:1701244   PMID:1794058   PMID:1971252   PMID:2438288   PMID:2468782   PMID:7504672   PMID:7524110   PMID:7525597   PMID:7587381  
PMID:7601457   PMID:7626882   PMID:7961179   PMID:8422501   PMID:8499946   PMID:8662231   PMID:8683100   PMID:8793730   PMID:8835527   PMID:8889548   PMID:8918259   PMID:9021743  
PMID:9801359   PMID:10349636   PMID:10837135   PMID:10859164   PMID:11042159   PMID:11076861   PMID:11172053   PMID:11217851   PMID:11387227   PMID:11416142   PMID:11726638   PMID:12106033  
PMID:12397396   PMID:12477932   PMID:12887597   PMID:14610273   PMID:14681479   PMID:15226823   PMID:15489334   PMID:15798201   PMID:16141072   PMID:16141073   PMID:16400024   PMID:17804407  
PMID:17989297   PMID:18287559   PMID:18799693   PMID:21196491   PMID:21267068   PMID:21677750   PMID:21705333   PMID:21873635   PMID:22696220   PMID:23676500   PMID:24952961   PMID:26387949  
PMID:27160897   PMID:27624940   PMID:28373281   PMID:28489004   PMID:28787093   PMID:30029086   PMID:30068389   PMID:31048931   PMID:31062247   PMID:31260032   PMID:32290105   PMID:32325033  


Genomics

Comparative Map Data
Atp1b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,490,554 - 69,496,786 (-)NCBIGRCm39mm39
GRCm39 Ensembl1169,490,562 - 69,496,768 (-)Ensembl
GRCm381169,599,728 - 69,605,978 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,599,736 - 69,605,942 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,413,252 - 69,419,462 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,415,948 - 69,422,024 (-)NCBImm8
Celera1176,563,216 - 76,569,425 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.86NCBI
ATP1B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,646,627 - 7,657,770 (+)EnsemblGRCh38hg38GRCh38
GRCh38177,646,627 - 7,657,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,549,945 - 7,561,088 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,494,979 - 7,501,814 (+)NCBINCBI36hg18NCBI36
Build 34177,494,978 - 7,501,814NCBI
Celera177,580,634 - 7,587,472 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,448,147 - 7,454,987 (+)NCBIHuRef
CHM1_1177,563,405 - 7,570,244 (+)NCBICHM1_1
Atp1b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,318,698 - 54,324,933 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1054,318,701 - 54,324,933 (-)Ensembl
Rnor_6.01056,205,622 - 56,211,879 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,205,625 - 56,211,891 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,951,260 - 55,957,510 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,418,323 - 56,424,465 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,431,946 - 56,438,088 (-)NCBI
Celera1053,472,960 - 53,479,196 (-)NCBICelera
Cytogenetic Map10q24NCBI
Atp1b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,261,775 - 9,268,743 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,261,775 - 9,268,743 (-)NCBIChiLan1.0ChiLan1.0
ATP1B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,669,997 - 7,675,730 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,669,626 - 7,673,834 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,681,831 - 7,688,710 (+)NCBIMhudiblu_PPA_v0panPan3
ATP1B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,548,591 - 32,553,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,549,167 - 32,553,504 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,687,510 - 32,694,048 (+)NCBI
ROS_Cfam_1.0532,653,348 - 32,659,884 (+)NCBI
UMICH_Zoey_3.1532,621,044 - 32,627,582 (+)NCBI
UNSW_CanFamBas_1.0532,577,297 - 32,583,829 (+)NCBI
UU_Cfam_GSD_1.0532,756,419 - 32,762,956 (+)NCBI
Atp1b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,433,820 - 47,440,238 (+)NCBI
SpeTri2.0NW_004936595908,019 - 914,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP1B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,925,693 - 52,932,637 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,925,697 - 52,932,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,241,662 - 55,248,610 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP1B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,030,016 - 7,035,620 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl167,030,055 - 7,037,754 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605914,373,302 - 14,379,044 (-)NCBIVero_WHO_p1.0
Atp1b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,254,979 - 10,261,508 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Atp1b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371169,421,052 - 69,421,206UniSTSGRCm37
MGSCv371169,420,369 - 69,420,538UniSTSGRCm37
Cytogenetic Map11B3UniSTS
cM Map1140.0UniSTS
cM Map1140.0UniSTS
cM Map1140.0UniSTS
Atp1b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
Atp1b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,606,867 - 69,607,036UniSTSGRCm38
MGSCv371169,420,369 - 69,420,538UniSTSGRCm37
Cytogenetic Map11B3UniSTS
cM Map1140.0UniSTS
Atp1b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,607,550 - 69,607,704UniSTSGRCm38
MGSCv371169,421,052 - 69,421,206UniSTSGRCm37
Cytogenetic Map11B3UniSTS
cM Map1140.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1562
Count of miRNA genes:590
Interacting mature miRNAs:750
Transcripts:ENSMUST00000047889, ENSMUST00000130394, ENSMUST00000138694, ENSMUST00000144425, ENSMUST00000153198
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000047889   ⟹   ENSMUSP00000047353
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,490,562 - 69,496,655 (-)Ensembl
GRCm38.p6 Ensembl1169,599,736 - 69,605,829 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130394
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,490,567 - 69,496,768 (-)Ensembl
GRCm38.p6 Ensembl1169,599,741 - 69,605,942 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138694   ⟹   ENSMUSP00000116290
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,491,492 - 69,493,567 (-)Ensembl
GRCm38.p6 Ensembl1169,600,666 - 69,602,741 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144425
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,492,184 - 69,494,439 (-)Ensembl
GRCm38.p6 Ensembl1169,601,358 - 69,603,613 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153198
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,492,970 - 69,493,988 (-)Ensembl
GRCm38.p6 Ensembl1169,602,144 - 69,603,162 (-)Ensembl
RefSeq Acc Id: NM_013415   ⟹   NP_038201
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,490,554 - 69,496,786 (-)NCBI
GRCm381169,599,728 - 69,605,960 (-)NCBI
MGSCv371169,413,252 - 69,419,462 (-)RGD
Celera1176,563,216 - 76,569,425 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314232   ⟹   XP_017169721
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,490,554 - 69,496,786 (-)NCBI
GRCm381169,599,728 - 69,605,978 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038201   ⟸   NM_013415
- UniProtKB: P14231 (UniProtKB/Swiss-Prot),   Q3UR55 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169721   ⟸   XM_017314232
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000116290   ⟸   ENSMUST00000138694
RefSeq Acc Id: ENSMUSP00000047353   ⟸   ENSMUST00000047889

Promoters
RGD ID:6820438
Promoter ID:MM_KWN:8081
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000013392,   OTTMUST00000013394,   OTTMUST00000013395
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,416,836 - 69,417,387 (-)MPROMDB
RGD ID:6820384
Promoter ID:MM_KWN:8082
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell
Transcripts:ENSMUST00000053608,   ENSMUST00000094075,   OTTMUST00000013391,   OTTMUST00000013393
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,419,091 - 69,419,591 (-)MPROMDB
RGD ID:8675186
Promoter ID:EPDNEW_M15624
Type:multiple initiation site
Name:Atp1b2_1
Description:Mus musculus ATPase, Na+/K+ transporting, beta 2 polypeptide, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,605,960 - 69,606,020EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88109 AgrOrtholog
Ensembl Genes ENSMUSG00000041329 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000047353 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116290 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047889 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000138694 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Na/K_ATPase_sub_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/K_ATPase_sub_beta_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11932 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88109 ENTREZGENE
NCBI Gene 11932 ENTREZGENE
PANTHER PTHR11523 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Na_K-ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp1b2 PhenoGen
PROSITE ATPASE_NA_K_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPASE_NA_K_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs Na_K_ATPase_bet UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AT1B2_MOUSE UniProtKB/Swiss-Prot
  I7HIF3_MOUSE UniProtKB/TrEMBL
  P14231 ENTREZGENE
  Q3UR55 ENTREZGENE, UniProtKB/TrEMBL