Apod (apolipoprotein D) - Rat Genome Database

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Gene: Apod (apolipoprotein D) Mus musculus
Analyze
Symbol: Apod
Name: apolipoprotein D
RGD ID: 10180
MGI Page MGI
Description: Predicted to enable cholesterol binding activity. Involved in negative regulation of lipoprotein lipid oxidation and response to reactive oxygen species. Predicted to be located in several cellular components, including cytosolic ribosome; neuronal cell body; and perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; sensory organ; and skeleton. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human APOD (apolipoprotein D).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: apo-D
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,115,010 - 31,133,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,115,010 - 31,133,626 (-)EnsemblGRCm39 Ensembl
GRCm381631,296,192 - 31,314,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,296,192 - 31,314,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371631,296,278 - 31,314,682 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361631,215,939 - 31,234,343 (-)NCBIMGSCv36mm8
Celera1631,811,354 - 31,812,738 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,3-bis(4-hydroxyphenyl)propionitrile  (ISO)
2-acetamidofluorene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methyladenine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
8-anilinonaphthalene-1-sulfonic acid  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alachlor  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
celecoxib  (ISO)
chloroquine  (ISO)
cisplatin  (ISO)
clozapine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
DAUDA  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dichlorine  (ISO)
dioxygen  (ISO)
diquat  (EXP)
diuron  (ISO)
doxorubicin  (EXP,ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
flurbiprofen  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP,ISO)
haloperidol  (EXP)
indometacin  (ISO)
isoprenaline  (EXP)
medroxyprogesterone acetate  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP)
methylseleninic acid  (ISO)
monosodium L-glutamate  (EXP)
naphthalene  (EXP)
nickel atom  (ISO)
nitrofen  (ISO)
ospemifene  (ISO)
oxidopamine  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
paraquat  (EXP,ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (EXP)
phencyclidine  (EXP)
progesterone  (ISO)
propanal  (ISO)
raloxifene  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
thyroxine  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
vincristine  (ISO)
vinyl carbamate  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Apolipoprotein D gene polymorphism: a new genetic marker for type 2 diabetic subjects in Nauru and south India. Baker WA, etal., Diabet Med. 1994 Dec;11(10):947-52.
2. Gene expression in scrapie. Cloning of a new scrapie-responsive gene and the identification of increased levels of seven other mRNA transcripts. Dandoy-Dron F, etal., J Biol Chem 1998 Mar 27;273(13):7691-7.
3. Increased expression of apolipoprotein D following experimental traumatic brain injury. Franz G, etal., J Neurochem. 1999 Oct;73(4):1615-25.
4. Expression profiling of insulin action in human myotubes: induction of inflammatory and pro-angiogenic pathways in relationship with glycogen synthesis and type 2 diabetes. Hansen L, etal., Biochem Biophys Res Commun. 2004 Oct 15;323(2):685-95.
5. Factors affecting the lipid and apolipoprotein levels of cord sera. Lane DM and McConathy WJ, Pediatr Res. 1983 Feb;17(2):83-91.
6. Gene expression profiling of an arteriogenic impotence model. Lin CS, etal., Biochem Biophys Res Commun. 2001 Jul 13;285(2):565-9.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. MGD IEA MGD IEA
10. Hippocampal alterations of apolipoprotein E and D mRNA levels in vivo and in vitro following kainate excitotoxicity. Montpied P, etal., Epilepsy Res. 1999 Jun;35(2):135-46.
11. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
12. Mouse MP Annotation Import Pipeline RGD automated import pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Apolipoprotein D is elevated in oligodendrocytes in the peri-infarct region after experimental stroke: influence of enriched environment. Rickhag M, etal., J Cereb Blood Flow Metab. 2008 Mar;28(3):551-62. Epub 2007 Sep 12.
16. Increased levels of apolipoprotein D in cerebrospinal fluid and hippocampus of Alzheimer's patients. Terrisse L, etal., J Neurochem. 1998 Oct;71(4):1643-50.
17. Apolipoprotein-D polymorphism: a genetic marker for obesity and hyperinsulinemia. Vijayaraghavan S, etal., J Clin Endocrinol Metab. 1994 Aug;79(2):568-70.
Additional References at PubMed
PMID:1572665   PMID:7637575   PMID:7957904   PMID:8666283   PMID:8892759   PMID:9250875   PMID:10349636   PMID:11042159   PMID:11058744   PMID:11058760   PMID:11076861   PMID:11108726  
PMID:11217851   PMID:11744388   PMID:12477932   PMID:12815234   PMID:14522948   PMID:14610273   PMID:14703507   PMID:14993241   PMID:15215744   PMID:15582152   PMID:15668042   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16783635   PMID:17011169   PMID:18419796   PMID:19465111   PMID:19963028   PMID:20124557   PMID:20589901   PMID:20607718   PMID:20920539   PMID:21267068  
PMID:21632073   PMID:21688324   PMID:21862448   PMID:21873635   PMID:22398376   PMID:22417325   PMID:22581439   PMID:24082102   PMID:24764192   PMID:24952961   PMID:25426024   PMID:25548917  
PMID:25784209   PMID:26829325   PMID:27997532   PMID:29222871   PMID:29885491   PMID:30630053   PMID:30782214   PMID:32440710   PMID:32559215   PMID:32798728   PMID:33932339   PMID:34003106  
PMID:34321999  


Genomics

Comparative Map Data
Apod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,115,010 - 31,133,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,115,010 - 31,133,626 (-)EnsemblGRCm39 Ensembl
GRCm381631,296,192 - 31,314,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,296,192 - 31,314,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371631,296,278 - 31,314,682 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361631,215,939 - 31,234,343 (-)NCBIMGSCv36mm8
Celera1631,811,354 - 31,812,738 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.41NCBI
APOD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383195,568,705 - 195,583,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3195,568,705 - 195,584,033 (-)EnsemblGRCh38hg38GRCh38
GRCh373195,295,576 - 195,310,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,776,865 - 196,792,278 (-)NCBINCBI36Build 36hg18NCBI36
Celera3193,705,274 - 193,720,781 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3192,666,066 - 192,681,572 (-)NCBIHuRef
CHM1_13195,258,489 - 195,273,995 (-)NCBICHM1_1
T2T-CHM13v2.03198,275,776 - 198,291,015 (-)NCBIT2T-CHM13v2.0
Apod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,936,216 - 82,957,264 (+)NCBIGRCr8
mRatBN7.21169,431,261 - 69,452,306 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1169,431,260 - 69,452,305 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,268,259 - 78,289,302 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,921,321 - 70,942,415 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,957,346 - 69,978,387 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01172,705,204 - 72,726,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1172,705,129 - 72,726,301 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,781,496 - 75,804,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1168,851,395 - 68,872,467 (+)NCBICelera
Cytogenetic Map11q22NCBI
Apod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542013,553,254 - 13,570,357 (+)NCBIChiLan1.0ChiLan1.0
APOD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22193,479,636 - 193,495,178 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13193,484,335 - 193,499,805 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03192,852,887 - 192,868,233 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13203,152,476 - 203,167,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,152,476 - 203,168,060 (-)Ensemblpanpan1.1panPan2
APOD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13330,490,149 - 30,504,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3330,488,135 - 30,509,289 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3330,513,383 - 30,531,252 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03330,739,971 - 30,756,943 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3330,737,959 - 30,803,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13330,534,404 - 30,551,475 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03330,570,143 - 30,588,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,191,636 - 31,209,901 (+)NCBIUU_Cfam_GSD_1.0
Apod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602143,660,676 - 143,676,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936833259,660 - 277,246 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936833260,798 - 277,060 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,514,949 - 132,562,599 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,514,546 - 132,562,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213142,076,180 - 142,096,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11589,612,210 - 89,624,038 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1589,612,040 - 89,624,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604163,376,402 - 63,388,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apod
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473062,530,673 - 62,555,129 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473062,535,005 - 62,552,405 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Apod
577 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:949
Count of miRNA genes:482
Interacting mature miRNAs:585
Transcripts:ENSMUST00000023207, ENSMUST00000115230, ENSMUST00000130560, ENSMUST00000145837, ENSMUST00000155682, ENSMUST00000156456
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse

Markers in Region
X82648  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381631,297,123 - 31,297,277UniSTSGRCm38
MGSCv371631,297,209 - 31,297,363UniSTSGRCm37
Celera1631,812,285 - 31,812,439UniSTS
Cytogenetic Map16B2UniSTS
cM Map1621.2UniSTS
Whitehead_YAC16 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY596441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L39123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,115,974 - 31,133,412 (-)Ensembl
GRCm38.p6 Ensembl1631,297,156 - 31,314,594 (-)Ensembl
RefSeq Acc Id: ENSMUST00000115230   ⟹   ENSMUSP00000110885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,115,940 - 31,133,622 (-)Ensembl
GRCm38.p6 Ensembl1631,297,122 - 31,314,804 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130560   ⟹   ENSMUSP00000119827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,115,010 - 31,133,626 (-)Ensembl
GRCm38.p6 Ensembl1631,296,192 - 31,314,808 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,122,323 - 31,130,166 (-)Ensembl
GRCm38.p6 Ensembl1631,303,505 - 31,311,348 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,116,331 - 31,122,496 (-)Ensembl
GRCm38.p6 Ensembl1631,297,513 - 31,303,678 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,116,238 - 31,122,263 (-)Ensembl
GRCm38.p6 Ensembl1631,297,420 - 31,303,445 (-)Ensembl
RefSeq Acc Id: NM_001301353   ⟹   NP_001288282
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,115,010 - 31,133,626 (-)NCBI
GRCm381631,296,192 - 31,314,808 (-)NCBI
Celera1631,811,354 - 31,827,009 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301354   ⟹   NP_001288283
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,115,010 - 31,133,626 (-)NCBI
GRCm381631,296,192 - 31,314,808 (-)NCBI
Celera1631,811,354 - 31,827,009 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007470   ⟹   NP_031496
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,115,010 - 31,133,626 (-)NCBI
GRCm381631,296,192 - 31,314,808 (-)NCBI
MGSCv371631,296,278 - 31,314,682 (-)RGD
Celera1631,811,354 - 31,827,009 (-)NCBI
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031496   ⟸   NM_007470
- Peptide Label: precursor
- UniProtKB: Q3TZE7 (UniProtKB/Swiss-Prot),   P51910 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288283   ⟸   NM_001301354
- Peptide Label: precursor
- UniProtKB: Q3TZE7 (UniProtKB/Swiss-Prot),   P51910 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288282   ⟸   NM_001301353
- Peptide Label: precursor
- UniProtKB: Q3TZE7 (UniProtKB/Swiss-Prot),   P51910 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000119827   ⟸   ENSMUST00000130560
RefSeq Acc Id: ENSMUSP00000110885   ⟸   ENSMUST00000115230

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51910-F1-model_v2 AlphaFold P51910 1-189 view protein structure

Promoters
RGD ID:6826805
Promoter ID:MM_KWN:20706
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Brain
Transcripts:OTTMUST00000063759,   OTTMUST00000063761,   UC007YXG.1,   UC007YXH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361631,314,384 - 31,314,884 (-)MPROMDB
RGD ID:8685954
Promoter ID:EPDNEW_M21006
Type:initiation region
Name:Apod_1
Description:Mus musculus apolipoprotein D , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21007  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381631,314,596 - 31,314,656EPDNEW
RGD ID:8685952
Promoter ID:EPDNEW_M21007
Type:initiation region
Name:Apod_2
Description:Mus musculus apolipoprotein D , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21006  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381631,314,832 - 31,314,892EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88056 AgrOrtholog
Ensembl Genes ENSMUSG00000022548 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000115230 ENTREZGENE
  ENSMUST00000115230.2 UniProtKB/Swiss-Prot
  ENSMUST00000130560 ENTREZGENE
  ENSMUST00000130560.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
InterPro ApoD_vertbrte UniProtKB/Swiss-Prot
  ApolipopD UniProtKB/Swiss-Prot
  Calycin UniProtKB/Swiss-Prot
  Lipocalin_ApoD UniProtKB/Swiss-Prot
  Lipocalin_CS UniProtKB/Swiss-Prot
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot
KEGG Report mmu:11815 UniProtKB/Swiss-Prot
MGD MGI:88056 ENTREZGENE
NCBI Gene 11815 ENTREZGENE
PANTHER APOLIPOPROTEIN D UniProtKB/Swiss-Prot
  APOLIPOPROTEIN D UniProtKB/Swiss-Prot
Pfam Lipocalin_2 UniProtKB/Swiss-Prot
PhenoGen Apod PhenoGen
PIRSF Lipocalin_ApoD UniProtKB/Swiss-Prot
PRINTS APODVERTBRTE UniProtKB/Swiss-Prot
  APOLIPOPROTD UniProtKB/Swiss-Prot
  LIPOCALIN UniProtKB/Swiss-Prot
PROSITE LIPOCALIN UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
UniProt APOD_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TZE7 ENTREZGENE
UniProt Secondary Q3TZE7 UniProtKB/Swiss-Prot