Gm39291 (predicted gene, 39291) - Rat Genome Database

Name: Gm39291
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm39291 (predicted gene, 39291) Mus musculus

Analyze

Symbol:

Gm39291

Name:

predicted gene, 39291

RGD ID:

10037029

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	13,648,621 - 13,660,417 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	9	13,737,335 - 13,749,202 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	9	11,015,824 - 11,027,639 (-)	NCBI		Celera
Cytogenetic Map	9	A1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:14610273

Genomics

Variants

Variants in Gm39291
409 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142326	Tgq19_m	triglyceride QTL 19 (mouse)			Not determined			1	21060750	Mouse
1300899	Chol6_m	cholesterol 6 (mouse)			Not determined		9	1	29902913	Mouse
13434920	Dcollq1_m	differential colonization level QTL 1 (mouse)					9	1	30341840	Mouse
35673312	Ari7_m	antibody response to influenza 7, day 45, IgG3 (mouse)					9	7800001	22211296	Mouse
1300849	Sles4_m	systemic lupus erythmatosus suppressor 4 (mouse)			Not determined		9	9107562	37306370	Mouse
13504833	Bglu19_m	blood glucose level 19 (mouse)					9	9910768	43910768	Mouse
1300532	Tbs2_m	tuberculosis severity 2 (mouse)			Not determined		9	12369970	46370114	Mouse
10043917	Obq37_m	obesity QTL 37 (mouse)			Not determined		9	13391175	47391175	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_870544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_870545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CT010488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_870544

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	13,648,621 - 13,660,417 (-)	NCBI
GRCm38	9	13,737,335 - 13,749,202 (-)	NCBI

Sequence:

show sequence

CGCATGCGCCTGGCCGCCCAGTGAGAGTCAGCTAACAGGAAAATCTCCAGAAGGAAGAGGACAC
TAGTATGTCAGAGAAAACACAAGATGTGACGGCTTGGGAGAGGTGGACTCGAGGAAAATGAGAG
GAATGTGGGCGGCCTGTGGGATGAGGGGGTGAGGTATTTAAGGGTGAGGTTAGAAGTAGTGATG
TGAGATCATACGTGATGTGAGAACCCATTTTGTAACGGTAACAGTGAAGCTAAGCAGACTGATC
CCACGGCCTCCAGTTACCTTGCATTTACATCTGCTTCCTTCTGTTTGCATATTGCAGAGCCTAT
CAACTTTGCCCACCAGTGTTTCCTAAGCATGTACAAGAGGCCATGACATGAGATAGGAGTTCAA
GAAGGTATTGGGATGAATGCATGGACGGATGTCACTCACAGTTGAAAATATTGCTCCAGTTGTT
TTTACTGCTACAGCCAAACCTGAAGCTCACTGAGATAGTCTAGCTGGAAACTTTGCCCAAAGGA
TTCCTCCACCACTGCCTCCTATGTGCTGGGCTTGGTTTATAAGCTGGCCTCCATTTTCCCTCTA
CCCCCTAACATTCTCACTACTGCACAGCCAGCCCCTGTTCTCAAAAGTTCAATTCTATCTCAAG
TAAAAACTGACTCAGTCATAGAAAACCT

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RefSeq Acc Id:

XR_870545

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	13,648,621 - 13,660,173 (-)	NCBI
GRCm38	9	13,737,335 - 13,748,877 (-)	NCBI

Sequence:

show sequence

AGCAGACTGATCCCACGGCCTCCAGTTACCTTGCATTTACATCTGCTTCCTTCTGTAGCCTATC
AACTTTGCCCACCAGTGTTTCCTAAGCATGTACAAGAGGCCATGACATGAGATAGGAGTTCAAG
AAGGTATTGGGATGAATGCATGGACGGATGTCACTCACAGTTGAAAATATTGCTCCAGTTGTTT
TTACTGCTACAGCCAAACCTGAAGCTCACTGAGATAGTCTAGCTGGAAACTTTGCCCAAAGGAT
TCCTCCACCACTGCCTCCTATGTGCTGGGCTTGGTTTATAAGCTGGCCTCCATTTTCCCTCTAC
CCCCTAACATTCTCACTACTGCACAGCCAGCCCCTGTTCTCAAAAGTTCAATTCTATCTCAAGT
AAAAACTGACTCAGTCATAGAAAACCT

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Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5622176	ENTREZGENE
NCBI Gene	Gm39291	ENTREZGENE
PhenoGen	Gm39291	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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