Gm40731 (predicted gene, 40731) - Rat Genome Database

Name: Gm40731
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm40731 (predicted gene, 40731) Mus musculus

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Symbol:

Gm40731

Name:

predicted gene, 40731

RGD ID:

10018587

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	85,415,573 - 85,426,035 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	10	85,579,709 - 85,590,171 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	10	87,555,603 - 87,569,574 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm40731
230 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302035	Lmb4_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		10	66848187	92258673	Mouse
12910789	Pwgrq19_m	post-weaning growth rate QTL 19 (mouse)					10	82828700	92169056	Mouse
4142137	Femwf3_m	femur work to failure 3 (mouse)			Not determined			75338568	109338767	Mouse
1301787	Bsc1_m	brain size control 1 (mouse)			Not determined		10	58516969	92517096	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	18875748	129635869	Mouse
14746991	Manh68_m	mandible shape 68 (mouse)					10	52280497	86280497	Mouse
1357594	Estoq3_m	embryo survival total QTL 3 (mouse)			Not determined		10	84079650	122041528	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39175996	129635869	Mouse
4141479	W10q8_m	weight 10 weeks QTL 8 (mouse)			Not determined			84079650	122041528	Mouse
1301386	Sysbp1_m	systolic blood pressure 1 (mouse)			Not determined		10	10108265	87401095	Mouse
14700795	Mencq7_m	meniscus calcification QTL 7 (mouse)					10	85313864	86647864	Mouse
14747004	Mancz8_m	mandible centroid size 8 (mouse)					10	82078412	116078412	Mouse
4142496	W6q8_m	weight 6 weeks QTL 8 (mouse)			Not determined			84079650	122041528	Mouse
1302067	Scc9_m	colon tumor susceptibility 9 (mouse)			Not determined		10	18259333	125575232	Mouse
26884411	Bzwq8_m	bi-zygomatic width QTL 8, 10 week (mouse)					10	44876096	115935905	Mouse
11039497	Ltpr5a_m	Leishmania tropica response 5a (mouse)					10	73506901	107507047	Mouse
1357622	Espq3_m	embryo survival preimplantation QTL 3 (mouse)			Not determined		10	84079650	122041528	Mouse
4142365	Egq9_m	early growth QTL 9 (mouse)			Not determined			84079650	122041528	Mouse
1300533	Aem3_m	anti-erythrocyte autoantibody modifier 3 (mouse)			Not determined		10	65490938	99491121	Mouse
26884403	Cvht8_m	cranial vault height 8, 16 week (mouse)					10	22875899	91035862	Mouse
26884407	Bzwq14_m	bi-zygomatic width QTL 14, 16 wee (mouse)					10	45476096	120635905	Mouse
11251717	Siim1_m	stress induced immobility 1 (mouse)					10	78381268	112381268	Mouse
26884405	Huml2_m	humerus length 2, 5 week (mouse)					10	69735830	130430862	Mouse
1357740	Obsty3_m	obesity 3 (mouse)			Not determined		10	8235478	116190980	Mouse
13208560	Wght9_m	weight 9 (mouse)					10	59835822	120835905	Mouse
1301165	Lith7_m	lithogenic gene 7 (mouse)			Not determined		10	82309418	116309657	Mouse
1302060	El3_m	epilepsy 3 (mouse)			Not determined		10	65490938	99491121	Mouse
4141054	mwfh_m	modifier of white forlock hypopigmentation (mouse)			Not determined			83017003	117017136	Mouse
26884447	Sklq9_m	skull length QTL 9, 10 week (mouse)					10	67335830	111735905	Mouse
11353832	Pcholq4_m	plasma cholesterol QTL 4 (mouse)					10	73987216	125515907	Mouse
1357779	Tesq3_m	testis weight QTL 3 (mouse)			Not determined		10	84079650	122041528	Mouse
11059553	Lmr32d_m	leishmaniasis resistance 32d (mouse)					10	82309418	116309657	Mouse
11059554	Lmr32e_m	leishmaniasis resistance 32e (mouse)					10	82309418	116309657	Mouse
11059555	Lmr32f_m	leishmaniasis resistance 32f (mouse)					10	82309418	116309657	Mouse
26884426	Cvht1_m	cranial vault height 1, 5 week (mouse)					10	24675898	121035905	Mouse
26884424	Zlq9_m	zygomatic length QTL 9, 16 week (mouse)					10	63935779	115935905	Mouse
26884430	Zlq5_m	zygomatic length QTL 5, 10 week (mouse)					10	67835830	124835905	Mouse
1357632	Vtbt9_m	vertebral trabecular bone trait 9 (mouse)			Not determined		10	75338568	109338767	Mouse
11353843	Gluq1_m	blood glucose QTL 1 (mouse)					10	73987216	125515907	Mouse
10043881	Adip24_m	adiposity 24 (mouse)			Not determined		10	82392803	116392952	Mouse
1558757	Eae34_m	experimental allergic encephalomyelitis susceptibility 34 (mouse)			Not determined		10	21408154	114217230	Mouse
4141387	Lgaq5_m	late growth adjusted QTL 5 (mouse)			Not determined			84079650	122041528	Mouse
11059550	Lmr32a_m	leishmaniasis resistance 32a (mouse)					10	82309418	116309657	Mouse
11059551	Lmr32b_m	leishmaniasis resistance 32b (mouse)					10	82309418	116309657	Mouse
26884450	Sklq15_m	skull length QTL 15, 16 week (mouse)					10	59335822	122335905	Mouse
4141382	Ssrq4_m	stress response QTL 4 (mouse)			Not determined			82490938	90856102	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39175996	129635869	Mouse
1301737	Insq9_m	insulin QTL 9 (mouse)			Not determined		10	65490938	99491121	Mouse
1300975	Fembrs3_m	femur breaking strength 3 (mouse)			Not determined		10	75338568	109338767	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001779835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_001779835

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	85,415,573 - 85,426,035 (-)	NCBI
GRCm38	10	85,579,709 - 85,590,171 (-)	NCBI

Sequence:

show sequence

ATGCCAGGCATAACTGCGAATATTTTTCTTTCCTTGTTTCGTTTGGAAATGACAAGAACACTAA
TATACATGCTATTGTTGCCTTTATTCTACAGAGAATGAGGAAGAACAGAGAGACCTTGTAACTT
GTGTAAAAGCACACAGTTCTCAACAGCAGTGCTGGGCTATAGATGTGGGCATCTGGACTGAGAC
AAAGGAGAGACTCCACGGAAGACGGATTCATCCAACAGGCAGGTGGCACAGGAGACAGTTGCTT
CCTGGGAAATCCAGCAGGAGACTCAAAGTTGTCCCCAAAGTCATCGGTGGAGATGGCATTAGAA
GAAGGTGTCAGTACAATCTGGCTTCAGGGCACATACTTTCCTGAACACGTCCTCAGCTTAGATG
ATGTCTGCACTACAACTCCAACCACACTGAGGAGGGGCATCAATCAGGTCTGGACCCTTCCTTC
CTTCCATAGAAGCTCGCCACTGCTCAGGCTGACAGTGATATTCACTTCCTGCTCGGTATTTCTG
CTCACTAGTCAATCATCTTTGAATGAGCCTGGTTTGCCCTGTGTTCTGTTGTATCCTCCATAAG
TGTTTTTAGAATGAATGAGTAGATGTTTGTTAAACGGTCAATGAAGGTGCTGTATAGCGAGTTC
TTCCAAATTGGATCACTGCTTCTAGGAGGGAAGGCAGAGGCACATAGGAAGTAAAAAGCCAACA
AAAACATATGAAGCCCAGGAAGTTCCTAAAGTTAAGAGATTTACAAGGTTGAAGTCCCTCCTCA
ACTGTGGAGAGCCTTTGAAGGACCTCTTGGCAGGAATCTGACATTGGCCAAAGACAAGGAAATG
GACTTCAGGAAGGAATCTGACACCAGGGTATGGCGAAGAATTAAGTTCAGGCAGGAATCTTAAT
CTTAGGGTGGAACAAAAGAAGCAGGCTTCAGGTATGAATGTGACTTTGGGCTAGGACAGGCAAG
TAGGCTCAGATATTTTGATCATCCTGATAAGCCCTTAGAAACATTGATCATGTGACTTTATTGT
CTTGCCTGTTCCTTGACTGTTGGTGTTTATTGTCTTGTTTGTTCCTCATTAAACTGGTATAAAA
GTGGAATGGAAAAAAATAAACCTGCCTTCAGTCTCAA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:5623616	ENTREZGENE
NCBI Gene	Gm40731	ENTREZGENE
PhenoGen	Gm40731	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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