Gm39214 (predicted gene, 39214) - Rat Genome Database

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Gene: Gm39214 (predicted gene, 39214) Mus musculus
Analyze
Symbol: Gm39214
Name: predicted gene, 39214
RGD ID: 10017853
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm45423
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,453,028 - 86,493,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl886,457,421 - 86,491,873 (+)EnsemblGRCm39 Ensembl
GRCm38885,726,399 - 85,766,456 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,730,816 - 85,765,095 (+)EnsemblGRCm38mm10GRCm38
Celera890,024,919 - 90,060,948 (+)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm39214
1396 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000210912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl886,457,421 - 86,491,873 (+)Ensembl
GRCm38.p6 Ensembl885,730,816 - 85,765,095 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl886,457,445 - 86,461,427 (+)Ensembl
RefSeq Acc Id: ENSMUST00000247344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl886,457,440 - 86,491,873 (+)Ensembl
RefSeq Acc Id: XR_004935055
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39886,453,028 - 86,493,085 (+)NCBI
Sequence:
RefSeq Acc Id: XR_879039
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39886,453,028 - 86,493,085 (+)NCBI
GRCm38885,726,399 - 85,766,456 (+)NCBI
Sequence:
Promoters
RGD ID:15093486
Promoter ID:EPDNEWNC_M1387
Type:multiple initiation site
Name:Gm39214_1
Description:predicted gene, 39214 [Source:MGI Symbol;Acc:MGI:5622099]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38885,730,816 - 85,730,876EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000109754 Ensembl
MGD MGI:5622099 ENTREZGENE
NCBI Gene Gm39214 ENTREZGENE
PhenoGen Gm39214 PhenoGen