Gm38708 (predicted gene, 38708) - Rat Genome Database
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Gene: Gm38708 (predicted gene, 38708) Mus musculus
Analyze
Symbol: Gm38708
Name: predicted gene, 38708
RGD ID: 10013681
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: MODEL
Also known as: Gm44246; lnc129; lnc12928; Spe; Spehd
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,118,830 - 88,175,266 (-)NCBIGRCm39mm39
GRCm39 Ensembl688,165,379 - 88,167,663 (-)Ensembl
GRCm38688,141,848 - 88,198,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,188,397 - 88,190,681 (-)EnsemblGRCm38mm10GRCm38
Celera690,132,068 - 90,135,262 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14610273   PMID:30995471  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001785302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000203855
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,188,397 - 88,190,681 (-)Ensembl
RefSeq Acc Id: XR_001785302
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,141,842 - 88,174,365 (-)NCBI
GRCm38688,164,860 - 88,197,383 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785303
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,162,499 - 88,174,891 (-)NCBI
GRCm38688,185,517 - 88,197,909 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785304
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,162,499 - 88,174,430 (-)NCBI
GRCm38688,185,517 - 88,197,448 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785305
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,162,499 - 88,174,365 (-)NCBI
GRCm38688,185,517 - 88,197,383 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785306
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,162,499 - 88,175,266 (-)NCBI
GRCm38688,185,517 - 88,198,284 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785307
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,141,842 - 88,174,365 (-)NCBI
GRCm38688,164,860 - 88,197,383 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785308
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,162,499 - 88,174,891 (-)NCBI
GRCm38688,185,517 - 88,197,909 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785309
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,141,842 - 88,174,365 (-)NCBI
GRCm38688,164,860 - 88,197,383 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785311
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,129,524 - 88,174,365 (-)NCBI
GRCm38688,152,542 - 88,197,383 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785312
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,118,830 - 88,174,365 (-)NCBI
GRCm38688,141,848 - 88,197,383 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004933697
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,141,842 - 88,174,365 (-)NCBI
RefSeq Acc Id: XR_004933698
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,129,524 - 88,174,430 (-)NCBI
RefSeq Acc Id: XR_004933699
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,162,499 - 88,174,365 (-)NCBI
RefSeq Acc Id: XR_004933700
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,171,663 - 88,174,365 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000108010 Ensembl
MGD MGI:5621593 ENTREZGENE
NCBI Gene Gm38708 ENTREZGENE
PhenoGen Gm38708 PhenoGen