Gm29007 (predicted gene 29007) - Rat Genome Database

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Gene: Gm29007 (predicted gene 29007) Mus musculus
Analyze
Symbol: Gm29007
Name: predicted gene 29007
RGD ID: 10002632
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391237,145,655 - 37,156,751 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1237,142,784 - 37,156,788 (-)EnsemblGRCm39 Ensembl
GRCm381237,095,656 - 37,106,752 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1237,098,550 - 37,106,789 (-)EnsemblGRCm38mm10GRCm38
Celera1238,534,603 - 38,546,558 (-)NCBICelera
Cytogenetic Map12A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24316575  


Genomics

Variants

.
Variants in Gm29007
289 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000190633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1237,148,549 - 37,156,788 (-)Ensembl
GRCm38.p6 Ensembl1237,098,550 - 37,106,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1237,155,767 - 37,156,751 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1237,145,652 - 37,156,751 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1237,142,784 - 37,156,746 (-)Ensembl
RefSeq Acc Id: NR_166883
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391237,145,655 - 37,156,751 (-)NCBI
GRCm381237,095,656 - 37,106,752 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166884
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391237,145,655 - 37,156,751 (-)NCBI
GRCm381237,095,656 - 37,106,752 (-)NCBI
Sequence:
Promoters
RGD ID:15094102
Promoter ID:EPDNEWNC_M2005
Type:single initiation site
Name:Gm29007_1
Description:predicted gene 29007 [Source:MGI Symbol;Acc:MGI:5579713]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381237,106,752 - 37,106,812EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101067 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000243862 ENTREZGENE
MGD MGI:5579713 ENTREZGENE
NCBI Gene Gm29007 ENTREZGENE
PhenoGen Gm29007 PhenoGen
RNAcentral URS000198101B RNACentral
  URS000198111C RNACentral