Gm15286 (predicted gene 15286) - Rat Genome Database

Name: Gm15286
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm15286 (predicted gene 15286) Mus musculus

Analyze

Symbol:

Gm15286

Name:

predicted gene 15286

RGD ID:

10000844

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	111,716,736 - 111,781,375 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	111,716,795 - 111,781,364 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	111,580,202 - 111,644,841 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	111,580,261 - 111,644,830 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	13	115,893,683 - 115,958,557 (+)	NCBI		Celera
Cytogenetic Map	13	D2.2	NCBI
cM Map	13	63.34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10512203	PMID:14610273	PMID:15840001	PMID:18799693

Genomics

Variants

Variants in Gm15286
2569 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	212
Count of miRNA genes:	191
Interacting mature miRNAs:	207
Transcripts:	ENSMUST00000150623, ENSMUST00000156236
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
4142314	Tailaq3_m	tail length adjusted QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
4140959	W10q17_m	weight 10 weeks QTL 17 (mouse)			Not determined			55720354	112431103	Mouse
4141992	W6q16_m	weight 6 weeks QTL 16 (mouse)			Not determined			55720354	112431103	Mouse
4142241	Tailq3_m	tail length QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
4141266	Mol3_m	modifier of LPS-response 3 (mouse)			Not determined			76132600	112431103	Mouse
12880414	V125Dq10_m	vitamin D active form serum level QTL 10 (mouse)					13	78036508	112036508	Mouse
10043997	Bw40_m	body weight QTL 40 (mouse)			Not determined		14	79239045	113239162	Mouse
10045623	Heal18_m	wound healing regeneration 18 (mouse)			Not determined		13	79239045	113239162	Mouse
1558741	Ses10_m	salmonella enteritidis susceptibility 10 (mouse)			Not determined		13	82739968	116740106	Mouse
4142465	Pbwg17_m	postnatal body weight growth 17 (mouse)			Not determined		13	83876060	117876256	Mouse
14700691	Cisaq1_m	coxsackieviral infection serum ALT QTL 1 (mouse)					13	86148119	120461536	Mouse
4140995	Fbtq6_m	femoral bone trait QTL 6 (mouse)			Not determined		13	86341617	120341758	Mouse
4141728	Egaq4_m	early growth adjusted QTL 4 (mouse)			Not determined			87901985	112431103	Mouse
1300939	Hrtfm6_m	heart failure modifier 6 (mouse)			Not determined		13	91383692	120883175	Mouse
1300876	Tanidd2_m	tally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)			Not determined		13	91965303	120883175	Mouse
1301142	Heal2_m	wound healing/regeneration 2 (mouse)			Not determined		13	93875267	120883175	Mouse
4142338	Skmw18_m	skeletal muscle weight 18 (mouse)			Not determined		13	94528399	120883175	Mouse
1558763	Gct9_m	granulosa cell tumorigenesis 9 (mouse)			Not determined		13	95036824	120883175	Mouse
1357468	Rplag_m	reduced platelet aggregation (mouse)			Not determined		13	95502130	120883175	Mouse
14746974	Manh75_m	mandible shape 75 (mouse)					13	99386647	120883175	Mouse
12879496	Fexq2_m	fear expression QTL 2 (mouse)					13	100741519	120883175	Mouse
13824989	Pbsq1_m	percent broken sperm QTL 1 (mouse)					13	102136508	112136534	Mouse
4142400	Tgq24_m	triglyceride QTL 24 (mouse)			Not determined			102602630	120883175	Mouse
4141826	Tbqt5_m	tibia bone quality traits 5 (mouse)			Not determined		13	103341617	117043216	Mouse
4142334	Svtms_m	survival time modifier of Sod2 (mouse)			Not determined		13	107613580	119476372	Mouse
4141704	Hipq1_m	hyperinsulin production QTL 1 (mouse)			Not determined			110409487	119476372	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_873957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_873958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_873959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000150623

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	111,753,075 - 111,779,369 (+)	Ensembl
GRCm38.p6 Ensembl	13	111,616,541 - 111,642,835 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000156236

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	111,716,795 - 111,781,364 (+)	Ensembl
GRCm38.p6 Ensembl	13	111,580,261 - 111,644,830 (+)	Ensembl

RefSeq Acc Id:

XR_873957

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	111,716,736 - 111,781,375 (+)	NCBI
GRCm38	13	111,580,202 - 111,644,841 (+)	NCBI

Sequence:

show sequence

GCTTGTTGAAGGAAGTATGTCACTGTGGAGGCAGGGATTTCAGGCTCGTACGCTCAGGCTCCGC
CCAGTGCAGAAAGCAATCCTGCTTTTGGCTGCTTTGGTATCGGGATGTAGTAGAACTTTCGGTA
TTTCCAACGCATGTCTGCCTGCACACTGCCATGCTCCCCGTCATGATGATAATGGACTGGACTT
CTGAAACGTACTGTGGAACTGTGGATTGAACCTAGAGCTTTGCACACGTTACCAAACTAACCAC
TCAGTTCCAGACTCCGGACCGTGAGATGGTGCTACCCAGATCCAGGGTGTATCTCTGTGGGGAT
GCTCTCGCATGCACATACCTCCTCATTGATTGAAACCTCAGTCCAGGTGGCCTTGAAGATTAAT
CATCACAGTAGCAGCCAACCCACTGCCCTGAGCTTTACAGGATCTTCCACGTCCTCAGATGCCA
GCCTGAAAATTATACCCAACATATCCACACCTCCCTCACTACCTCATTCTCCTACTTTGGTGTA
GATTTATTTCAAAGAGCAGTTATTTGAAGCTTCAATCAAATTATACACCAGGAGTTCCTGCCAT
TTTTGTTGCTGAGTGATGTCCTATGCTATTGATGTGCCATTTATTGACAAACTATTTATCCTGT
GGCGTACAACTGGTTATTTTCAGATTTGGATTATTATGAATAAAGCTACCG

hide sequence

RefSeq Acc Id:

XR_873958

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	111,716,736 - 111,781,375 (+)	NCBI
GRCm38	13	111,580,202 - 111,644,841 (+)	NCBI

Sequence:

show sequence

GCTTGTTGAAGGAAGTATGTCACTGTGGAGGCAGGGATTTCAGGCTCGTACGCTCAGGCTCCGC
CCAGTGCAGAAAGCAATCCTGCTTTTGGCTGCTTTGGTATCGGGATGTAGTAGAACTTTCGGTA
TTTCCAACGCATGTCTGCCTGCACACTGCCATGCTCCCCGTCATGATGATAATGGACTGGACTT
CTGAAACGTACTGTGGAACTGTGGATTGAACCTAGAGCTTTGCACACGTTACCAAACTAACCAC
TCAGTTCCAGACTCCGGACCGTGAGATGGTGCTACCCAGATCCAGGGTGTATCTCTGTGGGGAT
GCTCTCGCATGCACATACCTCCTCATTGATTGAAACCTCAGTCCAGAGCAGTTATTTGAAGCTT
CAATCAAATTATACACCAGGAGTTCCTGCCATTTTTGTTGCTGAGTGATGTCCTATGCTATTGA
TGTGCCATTTATTGACAAACTATTTATCCTGTGGCGTACAACTGGTTATTTTCAGATTTGGATT
ATTATGAATAAAGCTACCG

hide sequence

RefSeq Acc Id:

XR_873959

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	111,716,736 - 111,781,375 (+)	NCBI
GRCm38	13	111,580,202 - 111,644,841 (+)	NCBI

Sequence:

show sequence

GCTTGTTGAAGGAAGTATGTCACTGTGGAGGCAGGGATTTCAGGCTCGTACGCTCAGGCTCCGC
CCAGTGCAGAAAGCAATCCTGCTTTTGGCTGCTTTGGTATCGGGATGTAGTAGAACTTTCGGTA
TTTCCAACGCATGTCTGCCTGCACACTGCCATGCTCCCCGTCATGATGATAATGGACTGGACTT
CTGAAACGTACTGTGGAACTGTGGATTGAACCTAGAGCTTTGCACACGTTACCAAACTAACCAC
TCAGTTGGTGTCACTGCTTGAGCAGTTTAGGAAGTGCAGCCTTGGTGGAGGAAGTATGTCACCA
AAGTTCCAGACTCCGGACCGTGAGATGGTGCTACCCAGATCCAGGGTGTATCTCTGTGGGGATG
CTCTCGCATGCACATACCTCCTCATTGATTGAAACCTCAGTCCAGGTGGCCTTGAAGATTAATC
ATCACAGTAGCAGCCAACCCACTGCCCTGAGCTTTACAGGATCTTCCACGTCCTCAGATGCCAG
CCTGAAAATTATACCCAACATATCCACACCTCCCTCACTACCTCATTCTCCTACTTTGGTGTAG
ATTTATTTCAAAGAGCAGTTATTTGAAGCTTCAATCAAATTATACACCAGGAGTTCCTGCCATT
TTTGTTGCTGAGTGATGTCCTATGCTATTGATGTGCCATTTATTGACAAACTATTTATCCTGTG
GCGTACAACTGGTTATTTTCAGATTTGGATTATTATGAATAAAGCTACCG

hide sequence

Promoters

RGD ID:

15094370

Promoter ID:

EPDNEWNC_M2280

Type:

multiple initiation site

Name:

Gm15286_1

Description:

predicted gene 15286 [Source:MGI Symbol;Acc:MGI:3705204]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	111,580,268 - 111,580,328	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000086649	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000156236	ENTREZGENE
MGD	MGI:3705204	ENTREZGENE
NCBI Gene	Gm15286	ENTREZGENE
PhenoGen	Gm15286	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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