Gm26881 (predicted gene, 26881) - Rat Genome Database

Name: Gm26881
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm26881 (predicted gene, 26881) Mus musculus

Analyze

Symbol:

Gm26881

Name:

predicted gene, 26881

RGD ID:

10000423

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

NCBI Annotation Information:

Genome Annotation Status: not in current annotation release

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39 Ensembl	4	43,045,966 - 43,053,259 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	43,046,155 - 43,053,256 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	43,045,966 - 43,053,254 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	4	43,076,276 - 43,083,253 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073

Genomics

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	99
Count of miRNA genes:	95
Interacting mature miRNAs:	99
Transcripts:	ENSMUST00000180426
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_881212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_881213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_881214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_881215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_881216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_881217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK043958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL672276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000180426

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	43,046,034 - 43,053,254 (+)	Ensembl
GRCm38.p6 Ensembl	4	43,046,034 - 43,053,254 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000209785

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	43,045,966 - 43,053,259 (+)	Ensembl
GRCm38.p6 Ensembl	4	43,045,966 - 43,053,251 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000211208

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	43,046,007 - 43,053,254 (+)	Ensembl
GRCm38.p6 Ensembl	4	43,046,042 - 43,053,254 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000245951

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	43,045,985 - 43,053,257 (+)	Ensembl

RefSeq Acc Id:

XR_881212

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,191 - 43,053,256 (+)	NCBI

Sequence:

show sequence

CTGCAGGTCGTCTGAGGTCCCACCCCGGCCACGTGCGGCTTCTGTGATGACAGGTCCAGAAGGG
CGGGGCTTTGGCTGACTAGCTAGGTCTGTGTGTAGGTCTGTGCATGTGAACCTAGGTGCCTGCG
GAGTCTAGAAGAGAATGGCAGATCCCCTAGAGCTGGAGCTGGAGCTGGAGTTGGAGTTGGAGTT
GGAGTTGGAGTTGGAGCTGGAGCTGAAGCTGGAACTGTGAGCATGTGTGGTGTAAACCAAACTT
GTGTCTTGAAAAGGCAGTAGGGTGTTCCCAGCCCCTCTCCTTGAAACTGGTCTGCATGCTAACC
TCCTAGGACAGAATCTCTCTGTGTGTGTTGTGTTTGTGTTTTGTTTGTTTGTTTTTAGATACAC
CAATTCCTATGAACTTGAGAGGGGGAGACATTACAGAGAACATTCTATGAAAAGGACAGATGGT
AGTTGGAGAGCTGGCTCATCCCTTCAGAGCACTGGTTGTTCTTTCAAACATTGACCTGGGTTCA
ATTGTCAGCACCTACATGGCAGCTCAAAAATGTTTGAACTCAGGCCATCAGGAGTGGCAGCAAG
CCGTTTTACTCCCTGAGCCATCTCATCGACTTTGGGGTTTTCTTAATTACATCATGGGAAGGCC
CATCTTGAATGTTATGGACTAAACAGTTCCCTCAAGCCTCTGCAATGTGGCCTCCCTGCCATGA
CGGACTGTAACTTGGAACTGTGATATAAAACAAAGCCATACCTAAGACA

hide sequence

RefSeq Acc Id:

XR_881213

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,155 - 43,053,256 (+)	NCBI

Sequence:

show sequence

CGGCCCCAGCAGATGACGGAGGAGACAAAGTGATGGCTGCAGGTCGTCTGAGGTCCCACCCCGG
CCACGTGCGGCTTCTGTGATGACAGGTCTGTGTGTAGGTCTGTGCATGTGAACCTAGGTGCCTG
CGGAGTCTAGAAGAGAATGGCAGATCCCCTAGAGCTGGAGCTGGAGCTGGAGTTGGAGTTGGAG
TTGGAGTTGGAGTTGGAGCTGGAGCTGAAGCTGGAACTGTGAGCATGTGTGGTGTAAACCAAAC
TTGTGTCTTGAAAAGGCAGTAGGGTGTTCCCAGCCCCTCTCCTTGAAACTGGTCTGCATGCTAA
CCTCCTAGGACAGAATCTCTCTGTGTGTGTTGTGTTTGTGTTTTGTTTGTTTGTTTTTAGATAC
ACCAATTCCTATGAACTTGAGAGGGGGAGACATTACAGAGAACATTCTATGAAAAGGACAGATG
GTAGTTGGAGAGCTGGCTCATCCCTTCAGAGCACTGGTTGTTCTTTCAAACATTGACCTGGGTT
CAATTGTCAGCACCTACATGGCAGCTCAAAAATGTTTGAACTCAGGCCATCAGGAGTGGCAGCA
AGCCGTTTTACTCCCTGAGCCATCTCATCGACTTTGGGGTTTTCTTAATTACATCATGGGAAGG
CCCATCTTGAATGTTATGGACTAAACAGTTCCCTCAAGCCTCTGCAATGTGGCCTCCCTGCCAT
GACGGACTGTAACTTGGAACTGTGATATAAAACAAAGCCATACCTAAGACA

hide sequence

RefSeq Acc Id:

XR_881214

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,191 - 43,053,256 (+)	NCBI

Sequence:

show sequence

CTGCAGGTCGTCTGAGGTCCCACCCCGGCCACGTGCGGCTTCTGTGATGACAGGTCCAGAAGGG
CGGGGCTTTGGCTGACTAGCTAGGTCTGTGTGTAGGTCTGTGCATGTGAACCTAGGTGCCTGCG
GAGTCTAGAAGAGAATGGCAGATCCCCTAGAGCTGGAGCTGGAGCTGGAGTTGGAGTTGGAGTT
GGAGTTGGAGTTGGAGCTGGAGCTGAAGCTGGAACTGTGAGCATGTGTGGTGTAAACCAAACTT
GTGTCTTGAAAAGGCAGTAGGGTGTTCCCAGCCCCTCTCCTTGAAACTGGTCTGCATGCTAACC
TCCTAGGACAGAATCTCTCTGTGTGTGTTGTGTTTGTGTTTTGTTTGTTTGTTTTTAGATACAC
CAATTCCTATGAACTTGAGAGGGGGAGACATTACAGAGAACATTCTATGAAAAGGACAGATGGT
AGTTGGAGAGCTGGCTCATCCCTTCAGAGCACTGGTTGTTCTTTCAAACATTGACCTGGGTTCA
ATTGTCAGCACCTACATGGCAGCTCAAAAATGTTATGGACTAAACAGTTCCCTCAAGCCTCTGC
AATGTGGCCTCCCTGCCATGACGGACTGTAACTTGGAACTGTGATATAAAACAAAGCCATACCT
AAGACA

hide sequence

RefSeq Acc Id:

XR_881215

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,191 - 43,053,256 (+)	NCBI

Sequence:

show sequence

CTGCAGGTCGTCTGAGGTCCCACCCCGGCCACGTGCGGCTTCTGTGATGACAGGTCCAGAAGGG
CGGGGCTTTGGCTGACTAGCTAGGTCTGTGTGTAGGTCTGTGCATGTGAACCTAGGTGCCTGCG
GAGTCTAGAAGAGAATGGCAGATCCCCTAGAGCTGGAGCTGGAGCTGGAGTTGGAGTTGGAGTT
GGAGTTGGAGTTGGAGCTGGAGCTGAAGCTGGAACTGTTTGAACTCAGGCCATCAGGAGTGGCA
GCAAGCCGTTTTACTCCCTGAGCCATCTCATCGACTTTGGGGTTTTCTTAATTACATCATGGGA
AGGCCCATCTTGAATGTTATGGACTAAACAGTTCCCTCAAGCCTCTGCAATGTGGCCTCCCTGC
CATGACGGACTGTAACTTGGAACTGTGATATAAAACAAAGCCATACCTAAGACA

hide sequence

RefSeq Acc Id:

XR_881216

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,191 - 43,053,256 (+)	NCBI

Sequence:

show sequence

CTGCAGGTCGTCTGAGGTCCCACCCCGGCCACGTGCGGCTTCTGTGATGACAGGTCCAGAAGGG
CGGGGCTTTGGCTGACTAGCTAGGTCTGTGTGTAGGTCTGTGCATGTGAACCTAGGTGCCTGCG
GAGTCTAGAAGAGAATGGCAGATCCCCTAGAGCTGGAGCTGGAGCTGGAGTTGGAGTTGGAGTT
GGAGTTGGAGTTGGAGCTGGAGCTGAAGCTGGAACTGTTATGGACTAAACAGTTCCCTCAAGCC
TCTGCAATGTGGCCTCCCTGCCATGACGGACTGTAACTTGGAACTGTGATATAAAACAAAGCCA
TACCTAAGACA

hide sequence

RefSeq Acc Id:

XR_881217

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,191 - 43,053,256 (+)	NCBI

Sequence:

show sequence

CTGCAGGTCGTCTGAGGTCCCACCCCGGCCACGTGCGGCTTCTGTGATGACAGGTCCAGAAGGG
CGGGGCTTTGGCTGACTAGCTAGGTCTGTGTGTAGGTCTGTGCATGTGAACCTAGGTGCCTGCG
GAGTCTAGAAGAGAATGGCAGATCCCCTAGAGCTGGAGCTGGAGCTGGAGTTGGAGTTGGAGTT
GGAGTTGGAGTTGGAGCTGGAGCTGAAGCTGGAACTATACACCAATTCCTATGAACTTGAGAGG
GGGAGACATTACAGAGAACATTCTATGAAAAGGACAGATGGTAGTTGGAGAGCTGGCTCATCCC
TTCAGAGCACTGGTTGTTCTTTCAAACATTGACCTGGGTTCAATTGTCAGCACCTACATGGCAG
CTCAAAAATGTTTGAACTCAGGCCATCAGGAGTGGCAGCAAGCCGTTTTACTCCCTGAGCCATC
TCATCGACTTTGGGGTTTTCTTAATTACATCATGGGAAGGCCCATCTTGAATGTTATGGACTAA
ACAGTTCCCTCAAGCCTCTGCAATGTGGCCTCCCTGCCATGACGGACTGTAACTTGGAACTGTG
ATATAAAACAAAGCCATACCTAAGACA

hide sequence

Promoters

RGD ID:

6883192

Promoter ID:

EPDNEW_M5047

Type:

initiation region

Name:

AK043958_1

Description:

n/a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,032 - 43,046,092	EPDNEW

RGD ID:

15092678

Promoter ID:

EPDNEWNC_M595

Type:

initiation region

Name:

Gm26881_1

Description:

predicted gene, 26881 [Source:MGI Symbol;Acc:MGI:5477375]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	43,046,032 - 43,046,092	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000096974	Ensembl
MGD	MGI:5477375	ENTREZGENE
NCBI Gene	Gm26881	ENTREZGENE
PhenoGen	Gm26881	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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