Gm11770 (predicted gene 11770) - Rat Genome Database

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Gene: Gm11770 (predicted gene 11770) Mus musculus
Analyze
Symbol: Gm11770
Name: predicted gene 11770
RGD ID: 10000036
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,104,304 - 120,107,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,105,908 - 120,107,819 (-)EnsemblGRCm39 Ensembl
GRCm3811120,213,034 - 120,222,100 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,215,082 - 120,216,993 (-)EnsemblGRCm38mm10GRCm38
Celera11131,948,514 - 131,957,574 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:24200680   PMID:24316575   PMID:27899360  


Genomics

Variants

.
Variants in Gm11770
81 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:99
Interacting mature miRNAs:102
Transcripts:ENSMUST00000135048
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000135048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,105,908 - 120,107,819 (-)Ensembl
GRCm38.p6 Ensembl11120,215,082 - 120,216,993 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,105,908 - 120,107,463 (-)Ensembl
RefSeq Acc Id: NR_188979
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,105,908 - 120,107,463 (-)NCBI
RefSeq Acc Id: NR_188980
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,104,304 - 120,107,463 (-)NCBI

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086750 Ensembl
MGD MGI:3651450 ENTREZGENE
NCBI Gene Gm11770 ENTREZGENE
PhenoGen Gm11770 PhenoGen
RNAcentral URS0002853A61 RNACentral
  URS0002853AF8 RNACentral