Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

9 Annotations Found.

An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from sequence orthology with Gata6 (Rattus norvegicus)
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: involved_in
  • Original References(s): GO_REF:0000096 MGI:4417868


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Automated assignment of GO, PW and RDO ISO annotations across species
  • The annotation has been inferred from sequence orthology with Gata6 (Rattus norvegicus)
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Original References(s): PMID:15591218 REF_RGD_ID:2314197


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from mutant phenotype (IMP)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from mutant phenotype with MGI:3623678
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: acts_upstream_of_or_within
  • Curation Notes: (PMID:21350014)
  • Original References(s): PMID:21350014


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from sequence orthology with UniProtKB:Q92908
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: involved_in
  • Original References(s): GO_REF:0000119 MGI:4834177


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from genetic interaction (IGI)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from genetic interaction with MGI:106658 & MGI:107516 & MGI:108067
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: acts_upstream_of_or_within
  • Curation Notes: (PMID:16510470)
  • Original References(s): PMID:16510470


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from biological aspect of ancestor (IBA)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from biological aspect of ancestor with PANTHER:PTN001600628 & MGI:109497 & MGI:107516 & CGD:CAL0000194032 & UniProtKB:P23769 & WB:WBGene00001251 & UniProtKB:Q9BWX5 & ZFIN:ZDB-GENE-980526-476 & PomBase:SPCC1393.08 & Gata3 (Rattus norvegicus) & UniProtKB:Q92908 & MGI:95664 & WB:WBGene00001249 & ZFIN:ZDB-GENE-980526-268 & WB:WBGene00001250 & PomBase:SPCC1902.01 & MGI:95662 & ZFIN:ZDB-GENE-980526-340 & UniProtKB:P23771 & FB:FBgn0003117 & SGD:S000000842 & FB:FBgn0003507 & MGI:95663 & CGD:CAL0000197994 & Gata4 (Rattus norvegicus) & ZFIN:ZDB-GENE-000622-1 & UniProtKB:P15976 & UniProtKB:P43694 & FB:FBgn0038391 & MGI:95661 & WB:WBGene00001310 & Gata6 (Rattus norvegicus) & Gata2 (Rattus norvegicus)
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: involved_in
  • Original References(s): GO_REF:0000033


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from genetic interaction (IGI)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from genetic interaction with MGI:108067
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: acts_upstream_of_or_within
  • Curation Notes: (PMID:17164424)
  • Original References(s): PMID:17164424


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from mutant phenotype (IMP)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • The annotation has been inferred from mutant phenotype with MGI:2177785
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: acts_upstream_of_or_within
  • Curation Notes: (PMID:9832509)
  • Original References(s): PMID:9832509


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Mus musculus.        

  • The association was inferred from direct assay (IDA)
    		•  
  • The annotation was made from RGD pipelines: MGI data from the GO Consortium
  • 1304 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 18 papers in RGD have been used to annotate Gata6
  • Qualifier: acts_upstream_of_or_within
  • Curation Notes: (PMID:11914369), (PMID:15539431), (PMID:16199866), (PMID:16621466), (PMID:8660897), (PMID:9832509)
  • Original References(s): PMID:11914369 PMID:15539431 PMID:16199866 PMID:16621466 PMID:8660897 PMID:9832509


    • Go Back to source page   Continue to Ontology report