Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

5 Annotations Found.

An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Rattus norvegicus.        

  • The association was inferred from mutant phenotype (IMP)
    		•  
  • The annotation was made from Lepore JJ, etal., Arterioscler Thromb Vasc Biol. 2005 Feb;25(2):309-14. Epub 2004 Dec 9.
  • 1341 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 31 papers in RGD have been used to annotate Gata6


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with GATA6 (Homo sapiens)
  • 1341 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 31 papers in RGD have been used to annotate Gata6
  • Qualifier: involved_in
  • Curation Notes: (PMID:19497978), (PMID:19666519)
  • Original References(s): PMID:19497978 PMID:19666519


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Rattus norvegicus.        

  • The association was inferred from electronic annotation (IEA)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from electronic annotation with ARBA:ARBA00027996
  • 1341 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 31 papers in RGD have been used to annotate Gata6
  • Qualifier: involved_in
  • Curation Notes: GO_REF:0000117
  • Original References(s): GO_REF:0000117


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Rattus norvegicus.        

  • The association was inferred from biological aspect of ancestor (IBA)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from biological aspect of ancestor with CGD:CAL0000194032 & CGD:CAL0000197994 & FB:FBgn0003117 & FB:FBgn0003507 & FB:FBgn0038391 & MGI:107516 & MGI:109497 & MGI:95661 & MGI:95662 & MGI:95663 & MGI:95664 & PANTHER:PTN001600628 & PomBase:SPCC1393.08 & PomBase:SPCC1902.01 & Gata2 (Rattus norvegicus) & Gata4 (Rattus norvegicus) & Gata6 (Rattus norvegicus) & Gata3 (Rattus norvegicus) & SGD:S000000842 & UniProtKB:P15976 & UniProtKB:P23769 & UniProtKB:P23771 & UniProtKB:P43694 & UniProtKB:Q92908 & UniProtKB:Q9BWX5 & WB:WBGene00001249 & WB:WBGene00001250 & WB:WBGene00001251 & WB:WBGene00001310 & ZFIN:ZDB-GENE-000622-1 & ZFIN:ZDB-GENE-980526-268 & ZFIN:ZDB-GENE-980526-340 & ZFIN:ZDB-GENE-980526-476
  • 1341 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 31 papers in RGD have been used to annotate Gata6
  • Qualifier: involved_in
  • Curation Notes: GO_REF:0000033
  • Original References(s): GO_REF:0000033


    • An association has been curated linking Gata6 and positive regulation of transcription by RNA polymerase II in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with Gata6 (Mus musculus)
  • 1341 RGD objects have been annotated to positive regulation of transcription by RNA polymerase II  (GO:0045944)
  • 31 papers in RGD have been used to annotate Gata6
  • Qualifier: acts_upstream_of_or_within
  • Curation Notes: MGI:106658|MGI:107516|MGI:108067|MGI:2177785|MGI:3623678 (PMID:11914369), (PMID:15539431), (PMID:16199866), (PMID:16510470), (PMID:16621466), (PMID:17164424), (PMID:21350014), (PMID:8660897), (PMID:9832509)
  • Original References(s): PMID:11914369 PMID:15539431 PMID:16199866 PMID:16510470 PMID:16621466 PMID:17164424 PMID:21350014 PMID:8660897 PMID:9832509


    • Go Back to source page   Continue to Ontology report