Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

4 Annotations Found.

An association has been curated linking Ldlrap1 and protein binding in Rattus norvegicus.        

  • The association was inferred from physical interaction (IPI)
    		•  
  • The annotation was made from Dvir H, etal., Proc Natl Acad Sci U S A. 2012 May 1;109(18):6916-21. doi: 10.1073/pnas.1114128109. Epub 2012 Apr 16.
  • The annotation has been inferred from physical interaction with UniProtKB:P01130
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 11 papers in RGD have been used to annotate Ldlrap1
  • Qualifier: enables
  • Curation Notes: PMID:22509010


    • An association has been curated linking Ldlrap1 and protein binding in Rattus norvegicus.        

  • The association was inferred from physical interaction (IPI)
    		•  
  • The annotation was made from Nagai M, etal., Mol Biol Cell. 2003 Dec;14(12):4984-96. Epub 2003 Oct 3.
  • The annotation has been inferred from physical interaction with UniProtKB:P98158-PRO_0000017322
  • 2 additional annotations were made from Nagai M, etal., Mol Biol Cell. 2003 Dec;14(12):4984-96. Epub 2003 Oct 3.
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 11 papers in RGD have been used to annotate Ldlrap1
  • Qualifier: enables
  • Curation Notes: PMID:14528014


    • An association has been curated linking Ldlrap1 and protein binding in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with LDLRAP1 (Homo sapiens)
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 11 papers in RGD have been used to annotate Ldlrap1
  • Qualifier: enables
  • Curation Notes: UniProtKB:A8MTQ0|UniProtKB:P13378|UniProtKB:P31273|UniProtKB:P43358|UniProtKB:P63010|UniProtKB:P63010-2|UniProtKB:Q02548|UniProtKB:Q10567-3|UniProtKB:Q14192|UniProtKB:Q6ZVH7|UniProtKB:Q8NDX1-2|UniProtKB:Q9H668|UniProtKB:Q9UPT6 (PMID:12221107), (PMID:16189514), (PMID:25416956), (PMID:25910212), (PMID:27107012), (PMID:28514442), (PMID:32296183)
  • Original References(s): PMID:12221107 PMID:16189514 PMID:25416956 PMID:25910212 PMID:27107012 PMID:28514442 PMID:32296183


    • An association has been curated linking Ldlrap1 and protein binding in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with Ldlrap1 (Mus musculus)
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 11 papers in RGD have been used to annotate Ldlrap1
  • Qualifier: enables
  • Curation Notes: PR:P35951|UniProtKB:Q03157|UniProtKB:Q8R3R8|UniProtKB:Q91ZX7 (MGI:3762243|PMID:17727637), (PMID:12746448)
  • Original References(s): MGI:3762243 PMID:12746448 PMID:17727637


    • Go Back to source page   Continue to Ontology report