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GENE - TERM ANNOTATION REPORT

6 Annotations Found.

An association has been curated linking Ptpn22 and rheumatoid arthritis in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Rodriguez-Rodriguez L, etal., Arthritis Rheum. 2011 Feb;63(2):365-72. doi: 10.1002/art.30145.
  • The annotation has been inferred from sequence orthology with PTPN22 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 2 additional annotations were made from Rodriguez-Rodriguez L, etal., Arthritis Rheum. 2011 Feb;63(2):365-72. doi: 10.1002/art.30145.
  • 515 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 60 papers in RGD have been used to annotate Ptpn22
  • Curation Notes: DNA:snp:cds:p.R263Q (rs33996649) (human)


    • An association has been curated linking Ptpn22 and rheumatoid arthritis in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD automated import pipeline for CTD gene-to-disease annotations
  • The annotation has been inferred from sequence orthology with PTPN22 (Homo sapiens) [(EXP) inferred from experiment]
  • 515 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 60 papers in RGD have been used to annotate Ptpn22
  • Curation Notes: CTD Direct Evidence: marker/mechanism
  • Original References(s): PMID:19898480 PMID:20453842 PMID:21190368 PMID:23143596 PMID:30224649


    • An association has been curated linking Ptpn22 and rheumatoid arthritis in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Zhebrun D, etal., Aging (Albany NY). 2011 Apr;3(4):368-73.
  • The annotation has been inferred from sequence orthology with PTPN22 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 2 additional annotations were made from Zhebrun D, etal., Aging (Albany NY). 2011 Apr;3(4):368-73.
  • 515 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 60 papers in RGD have been used to annotate Ptpn22
  • Qualifier: no_association
  • Curation Notes: DNA:SNP::1858C>T (human)


    • An association has been curated linking Ptpn22 and rheumatoid arthritis in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Begovich AB, etal., Am J Hum Genet. 2004 Aug;75(2):330-7. Epub 2004 Jun 18.
  • The annotation has been inferred from sequence orthology with PTPN22 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 3 additional annotations were made from Begovich AB, etal., Am J Hum Genet. 2004 Aug;75(2):330-7. Epub 2004 Jun 18.
  • 515 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 60 papers in RGD have been used to annotate Ptpn22
  • Curation Notes: DNA:snp:cds:p.R620W (rs2476601) (human)


    • An association has been curated linking Ptpn22 and rheumatoid arthritis in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from OMIM Disease Annotation Pipeline
  • The annotation has been inferred from sequence orthology with PTPN22 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 515 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 60 papers in RGD have been used to annotate Ptpn22
  • Qualifier: susceptibility


    • An association has been curated linking Ptpn22 and rheumatoid arthritis in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred from sequence orthology with PTPN22 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 515 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 60 papers in RGD have been used to annotate Ptpn22
  • Curation Notes: ClinVar Annotator: match by term: RHEUMATOID ARTHRITIS, SUSCEPTIBILITY TO | ClinVar Annotator: match by term: Rheumatoid arthritis
  • Original References(s): PMID:15004560 PMID:15208781 PMID:15273934 PMID:15580548 PMID:15719322 PMID:15744042 PMID:16273109 PMID:16339849 PMID:16470599 PMID:17170052 PMID:17436241 PMID:17554300 PMID:17878369 PMID:18301444 PMID:18978792 PMID:19265110 PMID:19430480 PMID:19898480 PMID:21841778 PMID:25741868 PMID:28492532


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