Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

5 Annotations Found.

An association has been curated linking Casp9 and lung non-small cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Goehe RW, etal., J Clin Invest. 2010 Nov;120(11):3923-39. doi: 10.1172/JCI43552. Epub 2010 Oct 25.
  • The annotation has been inferred from sequence orthology with CASP9 (Homo sapiens) [(IEP) inferred from expression pattern]
  • 5 additional annotations were made from Goehe RW, etal., J Clin Invest. 2010 Nov;120(11):3923-39. doi: 10.1172/JCI43552. Epub 2010 Oct 25.
  • 635 RGD objects have been annotated to lung non-small cell carcinoma  (DOID:3908)
  • 111 papers in RGD have been used to annotate Casp9
  • Curation Notes: mRNA:splice variant:lung


    • An association has been curated linking Casp9 and lung non-small cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Lou Y, etal., Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2007 Feb;24(1):59-62.
  • The annotation has been inferred from sequence orthology with CASP9 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 8 additional annotations were made from Lou Y, etal., Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2007 Feb;24(1):59-62.
  • 635 RGD objects have been annotated to lung non-small cell carcinoma  (DOID:3908)
  • 111 papers in RGD have been used to annotate Casp9
  • Curation Notes: DNA, mRNA:SNP, decreased expression:exon, lung:rs1052576 (human)


    • An association has been curated linking Casp9 and lung non-small cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Krepela E, etal., J Cancer Res Clin Oncol. 2006 Jan;132(1):57-68. Epub 2005 Oct 18.
  • The annotation has been inferred from sequence orthology with CASP9 (Homo sapiens) [(IEP) inferred from expression pattern]
  • 10 additional annotations were made from Krepela E, etal., J Cancer Res Clin Oncol. 2006 Jan;132(1):57-68. Epub 2005 Oct 18.
  • 635 RGD objects have been annotated to lung non-small cell carcinoma  (DOID:3908)
  • 111 papers in RGD have been used to annotate Casp9
  • Curation Notes: mRNA:increased expression:lung


    • An association has been curated linking Casp9 and lung non-small cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Lou Y, etal., Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2007 Feb;24(1):59-62.
  • The annotation has been inferred from sequence orthology with CASP9 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 8 additional annotations were made from Lou Y, etal., Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2007 Feb;24(1):59-62.
  • 635 RGD objects have been annotated to lung non-small cell carcinoma  (DOID:3908)
  • 111 papers in RGD have been used to annotate Casp9
  • Qualifier: no_association
  • Curation Notes: DNA:SNP:exon:rs1052571 (human)


    • An association has been curated linking Casp9 and lung non-small cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Lee SY, etal., J Thorac Oncol. 2010 Aug;5(8):1152-8. doi: 10.1097/JTO.0b013e3181e04543.
  • The annotation has been inferred from sequence orthology with CASP9 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 8 additional annotations were made from Lee SY, etal., J Thorac Oncol. 2010 Aug;5(8):1152-8. doi: 10.1097/JTO.0b013e3181e04543.
  • 635 RGD objects have been annotated to lung non-small cell carcinoma  (DOID:3908)
  • 111 papers in RGD have been used to annotate Casp9
  • Curation Notes: DNA:SNP: :rs4645981 (human)


    • Go Back to source page   Continue to Ontology report