Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

4 Annotations Found.

An association has been curated linking Clptm1l and lung squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from James MA, etal., Cancer Res. 2014 Feb 15;74(4):1116-27. doi: 10.1158/0008-5472.CAN-13-1617. Epub 2013 Dec 23.
  • The annotation has been inferred from sequence orthology with CLPTM1L (Homo sapiens) [(IEP) inferred from expression pattern]
  • 11 additional annotations were made from James MA, etal., Cancer Res. 2014 Feb 15;74(4):1116-27. doi: 10.1158/0008-5472.CAN-13-1617. Epub 2013 Dec 23.
  • 88 RGD objects have been annotated to lung squamous cell carcinoma  (DOID:3907)
  • 30 papers in RGD have been used to annotate Clptm1l
  • Curation Notes: mRNA:increased expression:lung


    • An association has been curated linking Clptm1l and lung squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Zhong R, etal., Mol Carcinog. 2013 Nov;52 Suppl 1:E118-26. doi: 10.1002/mc.22043. Epub 2013 Jun 12.
  • The annotation has been inferred from sequence orthology with CLPTM1L (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 11 additional annotations were made from Zhong R, etal., Mol Carcinog. 2013 Nov;52 Suppl 1:E118-26. doi: 10.1002/mc.22043. Epub 2013 Jun 12.
  • 88 RGD objects have been annotated to lung squamous cell carcinoma  (DOID:3907)
  • 30 papers in RGD have been used to annotate Clptm1l
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNP:: rs31490(human)


    • An association has been curated linking Clptm1l and lung squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Zhang Y, etal., Med Oncol. 2014 Jul;31(7):18. doi: 10.1007/s12032-014-0018-4. Epub 2014 May 27.
  • The annotation has been inferred from sequence orthology with CLPTM1L (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 5 additional annotations were made from Zhang Y, etal., Med Oncol. 2014 Jul;31(7):18. doi: 10.1007/s12032-014-0018-4. Epub 2014 May 27.
  • 88 RGD objects have been annotated to lung squamous cell carcinoma  (DOID:3907)
  • 30 papers in RGD have been used to annotate Clptm1l
  • Qualifier: no_association
  • Curation Notes: DNA:SNP::rs401681(human)


    • An association has been curated linking Clptm1l and lung squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Jiang M, etal., PLoS One. 2013 Dec 30;8(12):e84277. doi: 10.1371/journal.pone.0084277. eCollection 2013.
  • The annotation has been inferred from sequence orthology with CLPTM1L (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 8 additional annotations were made from Jiang M, etal., PLoS One. 2013 Dec 30;8(12):e84277. doi: 10.1371/journal.pone.0084277. eCollection 2013.
  • 88 RGD objects have been annotated to lung squamous cell carcinoma  (DOID:3907)
  • 30 papers in RGD have been used to annotate Clptm1l
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNP: :rs401681(human)


    • Go Back to source page   Continue to Ontology report