Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

4 Annotations Found.

An association has been curated linking Cyp24a1 and colon cancer in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Yi C, etal., Pathol Res Pract. 2020 Jan;216(1):152735. doi: 10.1016/j.prp.2019.152735. Epub 2019 Nov 11.
  • The annotation has been inferred from sequence orthology with CYP24A1 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 7 additional annotations were made from Yi C, etal., Pathol Res Pract. 2020 Jan;216(1):152735. doi: 10.1016/j.prp.2019.152735. Epub 2019 Nov 11.
  • 250 RGD objects have been annotated to colon cancer  (DOID:219)
  • 55 papers in RGD have been used to annotate Cyp24a1
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNPs:introns: (rs4809960, rs6022999) (human)


    • An association has been curated linking Cyp24a1 and colon cancer in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Anderson MG, etal., Cancer Chemother Pharmacol. 2006 Jan;57(2):234-40. doi: 10.1007/s00280-005-0059-7. Epub 2005 Sep 23.
  • The annotation has been inferred from sequence orthology with CYP24A1 (Homo sapiens) [(IEP) inferred from expression pattern]
  • 11 additional annotations were made from Anderson MG, etal., Cancer Chemother Pharmacol. 2006 Jan;57(2):234-40. doi: 10.1007/s00280-005-0059-7. Epub 2005 Sep 23.
  • 250 RGD objects have been annotated to colon cancer  (DOID:219)
  • 55 papers in RGD have been used to annotate Cyp24a1
  • Curation Notes: mRNA:increased expression:colon (human)


    • An association has been curated linking Cyp24a1 and colon cancer in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Chen XQ, etal., World J Gastroenterol. 2017 Jul 28;23(28):5179-5186. doi: 10.3748/wjg.v23.i28.5179.
  • The annotation has been inferred from sequence orthology with CYP24A1 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 11 additional annotations were made from Chen XQ, etal., World J Gastroenterol. 2017 Jul 28;23(28):5179-5186. doi: 10.3748/wjg.v23.i28.5179.
  • 250 RGD objects have been annotated to colon cancer  (DOID:219)
  • 55 papers in RGD have been used to annotate Cyp24a1
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNPs:multiple (human)


    • An association has been curated linking Cyp24a1 and colon cancer in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Dong LM, etal., Cancer Epidemiol Biomarkers Prev. 2009 Sep;18(9):2540-8. doi: 10.1158/1055-9965.EPI-09-0228. Epub 2009 Aug 25.
  • The annotation has been inferred from sequence orthology with CYP24A1 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 3 additional annotations were made from Dong LM, etal., Cancer Epidemiol Biomarkers Prev. 2009 Sep;18(9):2540-8. doi: 10.1158/1055-9965.EPI-09-0228. Epub 2009 Aug 25.
  • 250 RGD objects have been annotated to colon cancer  (DOID:219)
  • 55 papers in RGD have been used to annotate Cyp24a1
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNP:intron: IVS4-66T>G, (rs4809958) (human)


    • Go Back to source page   Continue to Ontology report