Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

4 Annotations Found.

An association has been curated linking COL2A1 and myopia in Homo sapiens.        

  • The association was inferred from experiment (EXP)
    		•  
  • The annotation was made from RGD automated import pipeline for CTD gene-to-disease annotations
  • 214 RGD objects have been annotated to myopia  (DOID:11830)
  • 50 papers in RGD have been used to annotate COL2A1
  • Curation Notes: CTD Direct Evidence: marker/mechanism
  • Original References(s): PMID:17653045


    • An association has been curated linking COL2A1 and myopia in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from Zechi-Ceide RM, etal., Eur J Med Genet. 2008 May-Jun;51(3):183-96. doi: 10.1016/j.ejmg.2007.12.008. Epub 2008 Jan 9.
  • 6 additional annotations were made from Zechi-Ceide RM, etal., Eur J Med Genet. 2008 May-Jun;51(3):183-96. doi: 10.1016/j.ejmg.2007.12.008. Epub 2008 Jan 9.
  • 214 RGD objects have been annotated to myopia  (DOID:11830)
  • 50 papers in RGD have been used to annotate COL2A1
  • Qualifier: susceptibility
  • Curation Notes: associated with Stickler Syndrome, Type 1; DNA:mutations: exons:


    • An association has been curated linking COL2A1 and myopia in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from Mutti DO, etal., Mol Vis. 2007 Jun 28;13:1012-9.
  • 3 additional annotations were made from Mutti DO, etal., Mol Vis. 2007 Jun 28;13:1012-9.
  • 214 RGD objects have been annotated to myopia  (DOID:11830)
  • 50 papers in RGD have been used to annotate COL2A1
  • Curation Notes: DNA:snp:intron:g.IVS1-1194A>C (rs1635529) (human)


    • An association has been curated linking COL2A1 and myopia in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred by association of genotype and phenotype with RGD:8600542 (Homo sapiens)
  • 214 RGD objects have been annotated to myopia  (DOID:11830)
  • 50 papers in RGD have been used to annotate COL2A1
  • Curation Notes: ClinVar Annotator: match by term: Myopia
  • Original References(s): PMID:22496037 PMID:25741868 PMID:27390512 PMID:28018693 PMID:28492532 PMID:28983407 PMID:9800905


    • Go Back to source page   Continue to Ontology report