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Ontology Browser
Term:
Parent Terms Term With Siblings Child Terms
intergenic variant +    
conserved intergenic variant 
downstream gene variant +  
downstream transcript variant 
intergenic 1kb variant 
upstream gene variant +  
A sequence variant located 5' of a gene.
upstream transcript variant 

Synonyms
Exact Synonyms: Jannovar:upstream_gene_variant ;   VEP:upstream_gene_variant ;   snpEff:UPSTREAM ;   upstream gene variant
Related Synonyms: ANNOVAR:upstream
Xrefs: http://snpeff.sourceforge.net/SnpEff_manual.html ;   http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences
Definition Sources: SO:ke

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