upstream_gene_variant - Ontology Browser - Rat Genome Database

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Ontology Browser

upstream_gene_variant (SO:0001631)
Annotations: Rat: (0) Mouse: (0) Human: (0) Chinchilla: (0) Bonobo: (0) Dog: (0) Squirrel: (0) Pig: (0)

Parent Terms

Term With Siblings

Child Terms

intergenic variant + is-a

is-a

conserved intergenic variant

downstream gene variant +

downstream transcript variant

intergenic 1kb variant

upstream gene variant +

A sequence variant located 5' of a gene.

upstream transcript variant

is-a

2KB upstream variant

is-a

5KB upstream variant

Synonyms
Exact Synonyms:	Jannovar:upstream_gene_variant ; VEP:upstream_gene_variant ; snpEff:UPSTREAM ; upstream gene variant
Related Synonyms:	ANNOVAR:upstream
Xrefs:	http://snpeff.sourceforge.net/SnpEff_manual.html ; http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences
Definition Sources:	SO:ke

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