stop_retained_variant - Ontology Browser - Rat Genome Database

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Ontology Browser

stop_retained_variant (SO:0001567)
Annotations: Rat: (0) Mouse: (0) Human: (0) Chinchilla: (0) Bonobo: (0) Dog: (0) Squirrel: (0) Pig: (0) Naked Mole-rat: (0) Green Monkey: (0)

Parent Terms

Term With Siblings

Child Terms

synonymous variant + is-a

is-a

terminator codon variant + is-a

is-a

incomplete terminal codon variant

start retained variant

stop lost

stop retained variant

A sequence variant where at least one base in the terminator codon is changed, but the terminator remains.

Synonyms
Exact Synonyms:	Jannovar:stop_retained_variant ; VAAST:stop_retained ; VAAST:stop_retained_variant ; VEP:stop_retained_variant ; snpEff:NON_SYNONYMOUS_STOP ; snpEff:SYNONYMOUS_STOP ; stop retained variant
Xrefs:	http://snpeff.sourceforge.net/SnpEff_manual.html ; http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences
Definition Sources:	SO:ke

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