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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:urea cycle pathway
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Accession:PW:0000076 term browser browse the term
Definition:The series of metabolic reactions, occurring in the liver, by which the ammonia derived from the breakdown of amino acids combines with carbon dioxide to form urea.
Synonyms:related_synonym: Urea cycle
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show annotations for term's descendants           Sort by:
urea cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 IDA
ISO		 SMPDB
RGD		 PMID:4062872 SMP:00059, RGD:2300098 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422 		JBrowse link
G Arg2 arginase 2 ISO RGD PMID:19764983 RGD:4144088 NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378 		JBrowse link
G Asl argininosuccinate lyase IDA
ISO		 SMPDB
RGD		 PMID:4062872 SMP:00059, RGD:2300098 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ass1 argininosuccinate synthase 1 IDA
ISO		 SMPDB
RGD		 PMID:4062872 SMP:00059, RGD:2300098 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 IDA
ISO		 SMPDB
RGD		 PMID:3680220 PMID:4062872 SMP:00059, RGD:1582379, RGD:2300098 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033 		JBrowse link
G Gls2 glutaminase 2 ISO SMPDB SMP:00059 NCBI chr 7:617,252...633,424
Ensembl chr 7:617,288...633,426 		JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO SMPDB SMP:00059 NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO SMPDB SMP:00059 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
G Gpt glutamic--pyruvic transaminase ISO SMPDB SMP:00059 NCBI chr 7:108,416,646...108,419,495
Ensembl chr 7:108,416,642...108,419,494 		JBrowse link
G Otc ornithine transcarbamylase IDA
ISO		 SMPDB
RGD		 PMID:3680220 PMID:4062872 SMP:00059, RGD:1582379, RGD:2300098 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
G Slc1a4 solute carrier family 1 member 4 ISO SMPDB SMP:00059 NCBI chr14:94,530,801...94,560,190
Ensembl chr14:94,529,084...94,560,418 		JBrowse link
G Slc1a5 solute carrier family 1 member 5 ISO SMPDB SMP:00059 NCBI chr 1:77,456,849...77,470,952
Ensembl chr 1:77,456,694...77,470,952 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 ISO SMPDB SMP:00059 NCBI chr 3:56,097,166...56,191,841
Ensembl chr 3:56,097,269...56,192,100 		JBrowse link
G Slc25a15 solute carrier family 25 member 15 ISO SMPDB SMP:00059 NCBI chr16:69,631,581...69,654,869
Ensembl chr16:69,634,414...69,653,010 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    classic metabolic pathway 1854
      amino acid metabolic pathway 308
        urea cycle pathway 14
paths to the root