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EXPERIMENTAL CONDITION - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:peptide/protein
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Accession:XCO:0000193 term browser browse the term
Definition:Any natural or synthetic complex organic macromolecule composed of chain(s) of amino acids. A peptide can be contain as few as two amino acids; a protein can contain multiple chains composed of hundreds of amino acids.
Synonyms:related_synonym: polypeptide



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angiotensin II term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf16 Renal function QTL 16 IDA RGD PMID:14532335 RGD:727992 NCBI chr 6:5,074,497...34,434,305 JBrowse link
Q Rf22 Renal function QTL 22 IDA RGD PMID:14532335 RGD:727992 NCBI chr14:42,262,529...95,023,211 JBrowse link
Q Rf32 Renal function QTL 32 IDA RGD PMID:11721057 RGD:70849 NCBI chr 5:129,132,428...143,070,159 JBrowse link
Q Rf37 Renal function QTL 37 IDA RGD PMID:11721057 RGD:70849 NCBI chr 6:72,202,632...115,200,186 JBrowse link
Q Rf41 Renal function QTL 41 IDA RGD PMID:11721057 RGD:70849 NCBI chr12:28,064,557...40,218,380 JBrowse link
Q Rf42 Renal function QTL 42 IDA RGD PMID:11721057 RGD:70849 NCBI chr15:17,362,897...73,690,657 JBrowse link
Q Rf45 Renal function QTL 45 IDA RGD PMID:11721057 RGD:70849 NCBI chr19:15,605,023...46,559,041 JBrowse link
Q Rf8 Renal function QTL 8 IDA RGD PMID:14532335 RGD:727992 NCBI chr 1:228,581,588...259,647,894 JBrowse link
anti-glomerular basement membrane antibody term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom15 Glomerulus QTL 15 IDA RGD PMID:16482158 RGD:2293335 NCBI chr13:74,862,117...101,339,893 JBrowse link
Q Glom16 Glomerulus QTL 16 IDA RGD PMID:16482158 RGD:2293335 NCBI chr16:832,236...46,053,497 JBrowse link
Q Glom22 Glomerulus QTL 22 IDA RGD PMID:16482158 RGD:2293335 NCBI chr 1:11,481,482...32,355,910 JBrowse link
Q Glom23 Glomerulus QTL 23 IDA RGD PMID:16482158 RGD:2293335 NCBI chr 2:193,452,645...245,889,826 JBrowse link
Q Glom24 Glomerulus QTL 24 IDA RGD PMID:16482158 RGD:2293335 NCBI chr 5:97,570,330...136,479,578 JBrowse link
Q Glom25 Glomerulus QTL 25 IDA RGD PMID:16482158 RGD:2293335 NCBI chr10:82,685,200...107,211,142 JBrowse link
Q Glom26 Glomerulus QTL 26 IDA RGD PMID:16482158 RGD:2293335 NCBI chr15:12,496,141...65,205,939 JBrowse link
Q Kidm41 Kidney mass QTL 41 IDA RGD PMID:19448344 RGD:2312387 NCBI chr12:1...19,611,090 JBrowse link
Q Pur17 Proteinuria QTL 17 IDA RGD PMID:19448344 RGD:2312387 NCBI chr 1:156,677,124...218,753,816 JBrowse link
anti-RT6.1 antibody term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iddm11 Insulin dependent diabetes mellitus QTL 11 IDA RGD PMID:9892222 RGD:61480 NCBI chr 4:58,635,877...78,886,137 JBrowse link
Q Iddm12 Insulin dependent diabetes mellitus QTL 12 IDA RGD PMID:9892222 RGD:61480 NCBI chr13:5,994,668...34,535,351 JBrowse link
Q Iddm13 Insulin dependent diabetes mellitus QTL 13 IDA RGD PMID:9892222 RGD:61480 NCBI chr 3:130,193,298...161,695,983 JBrowse link
Q Iddm14 Insulin dependent diabetes mellitus QTL 14 IDA RGD PMID:10535446 RGD:61479 NCBI chr 4:64,528,739...157,573,521 JBrowse link
Q Iddm24 Insulin dependent diabetes mellitus QTL 24 IDA RGD PMID:17389329 RGD:1624306 NCBI chr 8:112,834,440...118,649,220 JBrowse link
antibody term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom17 Glomerulus QTL 17 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 1:166,532,971...191,278,129 JBrowse link
Q Glom18 Glomerulus QTL 18 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 1:185,356,336...231,689,108 JBrowse link
Q Glom19 Glomerulus QTL 19 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 4:45,456,990...146,803,430 JBrowse link
Q Glom20 Glomerulus QTL 20 IDA RGD PMID:18682577 RGD:2312422 NCBI chr11:44,285,759...82,566,702 JBrowse link
Q Glom21 Glomerulus QTL 21 IDA RGD PMID:18682577 RGD:2312422 NCBI chr18:5,185,858...40,503,530 JBrowse link
Q Pur18 Proteinuria QTL 18 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 5:2,138,965...32,656,739 JBrowse link
Q Pur19 Proteinuria QTL 19 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 4:65,882,107...96,130,297 JBrowse link
Q Pur20 Proteinuria QTL 20 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 6:125,628,133...137,801,795 JBrowse link
insulin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gluco11 Glucose level QTL 11 IDA RGD PMID:15752738 RGD:1357415 NCBI chr 4:85,379,421...167,139,601 JBrowse link
Q Gluco12 Glucose level QTL12 IDA RGD PMID:15752738 RGD:1357415 NCBI chr 4:5,218,392...29,593,287 JBrowse link
Q Gluco16 Glucose level QTL 16 IDA RGD PMID:9171835 RGD:61078 NCBI chr 4:1...30,372,989 JBrowse link
Q Gluco17 Glucose level QTL 17 IDA RGD PMID:9171835 RGD:61078
Q Gluco3 Glucose level QTL 3 IDA RGD PMID:9171835 RGD:61078
Q Gluco4 Glucose level QTL 4 IDA RGD PMID:9171835 RGD:61078 NCBI chr 4:1...33,250,345 JBrowse link
Q Gluco5 Glucose level QTL 5 IDA RGD PMID:9171835 RGD:61078 NCBI chr 4:1...33,250,345 JBrowse link
myelin oligodendrocyte glycoprotein term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eae12 Experimental allergic encephalomyelitis QTL 12 IDA RGD PMID:10545597 RGD:69695 NCBI chr10:92,238,497...101,012,337 JBrowse link
Q Eae13 Experimental allergic encephalomyelitis QTL 13 IDA RGD PMID:10545597 RGD:69695 NCBI chr12:24,139,202...36,638,073 JBrowse link
Q Eae14 Experimental allergic encephalomyelitis QTL 14 IDA RGD PMID:10545597 RGD:69695 NCBI chr13:23,203,448...68,203,448 JBrowse link
Q Eae15 Experimental allergic encephalomyelitis QTL 15 IDA RGD PMID:10545597 RGD:69695 NCBI chr18:76,477,814...77,209,844 JBrowse link
Q Eae16 Experimental allergic encephalomyelitis QTL 16 IDA RGD PMID:12517974 RGD:629629 NCBI chr 8:8,462,195...110,921,472 JBrowse link
Q Eae17 Experimental allergic encephalomyelitis QTL 17 IDA RGD PMID:12517974 RGD:629629 NCBI chr13:8,897,350...101,631,289 JBrowse link
Q Eae18 Experimental allergic encephalomyelitis QTL 18 IDA RGD PMID:11486278 RGD:1302800 NCBI chr10:107,057,622...107,211,142 JBrowse link
Q Eae18a Experimental allergic encephalomyelitis QTL 18a IDA RGD PMID:15240732 RGD:1302437 NCBI chr10:53,797,385...58,445,852 JBrowse link
Q Eae18b Experimental allergic encephalomyelitis QTL 18b IDA RGD PMID:15240732 RGD:1302437 NCBI chr10:61,248,303...67,785,171 JBrowse link
Q Eae19 Experimental allergic encephalomyelitis QTL 19 IDA RGD PMID:15716504 RGD:1549617 NCBI chr15:76,306,099...90,088,744 JBrowse link
Q Eae20 Experimental allergic encephalomyelitis QTL 20 IDA intradermal injection 20ug/rat RGD PMID:15634914 RGD:1547849 NCBI chr 4:153,031,106...158,841,762 JBrowse link
Q Eae21 Experimental allergic encephalomyelitis QTL 21 IDA RGD PMID:15634914 RGD:1547849 NCBI chr 4:157,680,158...158,841,762 JBrowse link
Q Eae22 Experimental allergic encephalomyelitis QTL 22 IDA RGD PMID:15634914 RGD:1547849
Q Eae23 Experimental allergic encephalomyelitis QTL 23 IDA RGD PMID:16624898 RGD:2293859 NCBI chr10:55,273,696...60,677,262 JBrowse link
Q Eae24 Experimental allergic encephalomyelitis QTL 24 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:66,993,185...72,752,834 JBrowse link
Q Eae25 Experimental allergic encephalomyelitis QTL 25 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:78,882,817...83,007,655 JBrowse link
Q Eae26 Experimental allergic encephalomyelitis QTL 26 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:88,656,681...103,194,984 JBrowse link
Q Eae27 Experimental allergic encephalomyelitis QTL 27 IDA RGD PMID:19675581 RGD:2317591 NCBI chr 4:103,194,805...112,478,794 JBrowse link
Q Eae29 Experimental allergic encephalomyelitis QTL 29 IDA RGD PMID:21041731 RGD:4888518 NCBI chr 1:5,925,877...24,697,545 JBrowse link
Q Eae30 Experimental allergic encephalomyelitis QTL 30 IDA RGD PMID:20072140 RGD:6892695 NCBI chr 1:123,053,310...128,593,844 JBrowse link
Q Eae31 Experimental allergic encephalomyelitis QTL 31 IDA RGD PMID:20072140 RGD:6892695 NCBI chr 1:178,810,256...188,377,506 JBrowse link
Q Eae32 Experimental allergic encephalomyelitis QTL 32 IDA RGD PMID:20856809 RGD:4889889 NCBI chr17:27,027,949...36,146,731 JBrowse link
Q Eae33 Experimental allergic encephalomyelitis QTL 33 IDA RGD PMID:20856809 RGD:4889889 NCBI chr17:50,909,099...86,022,412 JBrowse link
peripheral myelin protein 2 peptide 58-81 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ean1 Experimental allergic neuritis QTL 1 IDA RGD PMID:15342198 RGD:2306736
R16 peptide of interphotoreceptor retinoid-binding protein term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eau1 Experimental allergic uveoretinitis QTL 1 IDA RGD PMID:10323205 RGD:61073 NCBI chr 4:70,362,013...132,642,728 JBrowse link
Q Eau2 Experimental allergic uveoretinitis QTL 2 IDA RGD PMID:10323205 RGD:61073 NCBI chr12:8,525,423...28,064,601 JBrowse link
Q Eau3 Experimental allergic uveoretinitis QTL 3 IDA RGD PMID:10323205 RGD:61073 NCBI chr10:34,490,559...45,579,777 JBrowse link
Q Eau4 Experimental allergic uveoretinitis QTL 4 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 3:137,398,739...169,034,231 JBrowse link
Q Eau5 Experimental allergic uveoretinitis QTL 5 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 2:202,446,871...237,938,339 JBrowse link
Q Eau6 Experimental allergic uveoretinitis QTL 6 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 7:84,257,275...129,257,275 JBrowse link
Q Eau7 Experimental allergic uveoretinitis QTL 7 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:27,957,626...34,490,668 JBrowse link
Q Eau8 Experimental allergic uveoretinitis QTL 8 IDA RGD PMID:18453595 RGD:2296064 NCBI chr19:17,154,433...57,337,602 JBrowse link
Q Eau9 Experimental allergic uveoretinitis QTL 9 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:65,927,233...82,565,079 JBrowse link
thrombin term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Calcic1 Intracellular calcium level QTL 1 IDA RGD PMID:15882549 RGD:1547855 NCBI chr12:28,064,433...40,130,419 JBrowse link
Q Calcic2 Intracellular calcium level QTL 2 IDA RGD PMID:17261463 RGD:1599588 NCBI chr12:28,064,433...46,669,029 JBrowse link
type II collagen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cia1 Collagen induced arthritis QTL 1 IDA RGD PMID:8782824 RGD:61062 NCBI chr20:3,621,656...14,101,050 JBrowse link
Q Cia10 Collagen induced arthritis QTL 10 IDA RGD PMID:9870869 RGD:61063 NCBI chr 2:179,946,951...224,946,951 JBrowse link
Q Cia11 Collagen induced arthritis QTL 11 IDA RGD PMID:10857786 RGD:61066 NCBI chr 3:30,356,773...98,535,386 JBrowse link
Q Cia12 Collagen induced arthritis QTL 12 IDA RGD PMID:10857786 RGD:61066 NCBI chr12:13,635,523...35,682,913 JBrowse link
Q Cia13 Collagen induced arthritis QTL 13 IDA RGD PMID:11001927 RGD:61067 NCBI chr 4:132,642,577...167,139,601 JBrowse link
Q Cia14 Collagen induced arthritis QTL 14 IDA RGD PMID:10857786 RGD:61066 NCBI chr19:10,827,970...43,544,039 JBrowse link
Q Cia15 Collagen induced arthritis QTL 15 IDA RGD PMID:11001927 RGD:61067 NCBI chr 9:5,109,826...42,921,101 JBrowse link
Q Cia16 Collagen induced arthritis QTL 16 IDA RGD PMID:11001927 RGD:61067 NCBI chr10:6,357,896...96,121,100 JBrowse link
Q Cia17 Collagen induced arthritis QTL 17 IDA RGD PMID:11001927 RGD:61067 NCBI chr18:31,359,408...70,263,868 JBrowse link
Q Cia18 Collagen induced arthritis QTL 18 IDA RGD PMID:11001927 RGD:61067 NCBI chr  X:14,843,113...120,568,734 JBrowse link
Q Cia19 Collagen induced arthritis QTL 19 IDA RGD PMID:11001927 RGD:61067 NCBI chr  X:65,612,192...120,568,734 JBrowse link
Q Cia2 Collagen induced arthritis QTL 2 IDA RGD PMID:8782824 RGD:61062 NCBI chr 1:78,430,754...91,209,302 JBrowse link
Q Cia20 Collagen induced arthritis QTL 20 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:23,444,813...104,060,283 JBrowse link
Q Cia21 Collagen induced arthritis QTL 21 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:14,487,011...104,060,283 JBrowse link
Q Cia22 Collagen induced arthritis QTL 22 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:40,035,094...104,060,283 JBrowse link
Q Cia23 Collagen induced arthritis QTL 23 IDA RGD PMID:11003387 RGD:631168 NCBI chr10:40,035,094...104,060,283 JBrowse link
Q Cia24 Collagen induced arthritis QTL 24 IDA RGD PMID:10857786 RGD:61066 NCBI chr 4:146,565,735...175,236,377 JBrowse link
Q Cia25 Collagen induced arthritis QTL 25 IDA RGD PMID:15334486 RGD:1285224 NCBI chr12:19,610,889...35,682,913 JBrowse link
Q Cia26 Collagen induced arthritis QTL 26 IDA RGD PMID:15334486 RGD:1285224 NCBI chr18:54,709,769...83,828,827 JBrowse link
Q Cia27 Collagen induced arthritis QTL 27 IDA RGD PMID:9870869 RGD:61063 NCBI chr10:76,452,683...107,211,142 JBrowse link
Q Cia28 Collagen induced arthritis QTL 28 IDA RGD PMID:15944295 RGD:1359065 NCBI chr10:96,120,911...104,060,283 JBrowse link
Q Cia29 Collagen induced arthritis QTL 29 IDA RGD PMID:15944295 RGD:1359065 NCBI chr10:33,973,921...78,973,921 JBrowse link
Q Cia3 Collagen induced arthritis QTL 3 IDA RGD PMID:8782824 RGD:61062 NCBI chr 4:103,194,656...148,194,656 JBrowse link
Q Cia4 Collagen induced arthritis QTL 4 IDA RGD PMID:8782824 RGD:61062 NCBI chr 7:58,113,224...62,004,598 JBrowse link
Q Cia5 Collagen induced arthritis QTL 5 IDA RGD PMID:8782824 RGD:61062 NCBI chr10:91,228,102...104,060,283 JBrowse link
Q Cia6 Collagen induced arthritis QTL 6 IDA RGD PMID:11001927 RGD:61067 NCBI chr 8:82,460,758...122,812,818 JBrowse link
Q Cia7 Collagen induced arthritis QTL 7 IDA RGD PMID:11001927 RGD:61067 NCBI chr 2:59,324,377...141,596,857 JBrowse link
Q Cia8 Collagen induced arthritis QTL 8 IDA RGD PMID:10398805 RGD:61069
Q Cia9 Collagen induced arthritis QTL 9 IDA RGD PMID:9870869 RGD:61063
Q Ciaa1 CIA Autoantibody QTL 1 IDA RGD PMID:11001927 RGD:61067 NCBI chr20:2,646,395...4,597,031 JBrowse link
Q Ciaa2 CIA Autoantibody QTL 2 IDA RGD PMID:10857786 RGD:61066 NCBI chr10:63,221,094...107,211,142 JBrowse link
Q Ciaa3 CIA Autoantibody QTL 3 IDA RGD PMID:10857786 RGD:61066 NCBI chr 9:7,954,720...22,071,169 JBrowse link
Q Ciaa4 CIA Autoantibody QTL 4 IDA RGD PMID:11001927 RGD:61067 NCBI chr 4:126,395,976...167,139,601 JBrowse link
Q Ciaa5 CIA Autoantibody QTL 5 IDA RGD PMID:11001927 RGD:61067 NCBI chr 5:94,858,972...143,070,159 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  experimental condition 2376
    chemical 707
      chemical with specified structure 549
        peptide/protein 106
          Endothelin-1 0
          V1-Cal 0
          antibody + 22
          bovine serum albumin 0
          cytokine + 0
          enzyme + 2
          lactotransferrin 0
          myelin oligodendrocyte glycoprotein 23
          ovalbumin 0
          peptide hormone + 15
          peptide/protein antigen + 44
paths to the root