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EXPERIMENTAL CONDITION - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:specific pathogen-free condition
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Accession:XCO:0000087 term browser browse the term
Definition:A standard living condition with the absence of a resident pathogen, a biological agent that causes disease, especially a microorganism such as a bacterium, virus, or fungus.


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specific pathogen-free condition term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp79 Blood pressure QTL 79 IDA RGD PMID:9299556 RGD:70857 NCBI chr 4:3,043,231...79,575,658 JBrowse link
Q Bp80 Blood pressure QTL 80 IDA RGD PMID:9299556 RGD:70857 NCBI chr13:45,676,629...90,676,629 JBrowse link
Q Bw82 Body weight QTL 82 IDA RGD PMID:18612083 RGD:2298688 NCBI chr 3:40,523,593...64,880,586 JBrowse link
Q Bw94 Body weight QTL 94 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:103,141,814...176,418,101 JBrowse link
Q Bw95 Body weight QTL 95 IDA RGD PMID:19584880 RGD:2312642 NCBI chr16:1,550,187...63,210,301 JBrowse link
Q Eae1 Experimental allergic encephalomyelitis QTL 1 IDA RGD PMID:10640775 RGD:61031 NCBI chr20:4,039,113...5,875,448 JBrowse link
Q Eae10 Experimental allergic encephalomyelitis QTL 10 IDA RGD PMID:10640775 RGD:61031 NCBI chr14:19,191,664...19,909,740 JBrowse link
Q Eae11 Experimental allergic encephalomyelitis QTL 11 IDA RGD PMID:10640775 RGD:61031 NCBI chr 4:33,637,803...37,685,319 JBrowse link
Q Eae5 Experimental allergic encephalomyelitis QTL 5 IDA RGD PMID:10640775 RGD:61031 NCBI chr12:22,650,702...52,716,770 JBrowse link
Q Eae6 Experimental allergic encephalomyelitis QTL 6 IDA RGD PMID:10640775 RGD:61031 NCBI chr 1:188,289,244...198,656,062 JBrowse link
Q Eae7 Experimental allergic encephalomyelitis QTL 7 IDA RGD PMID:10640775 RGD:61031 NCBI chr 1:236,265,430...281,265,430 JBrowse link
Q Eae8 Experimental allergic encephalomyelitis QTL 8 IDA RGD PMID:10640775 RGD:61031 NCBI chr19:24,457,627...37,140,233 JBrowse link
Q Eae9 Experimental allergic encephalomyelitis QTL 9 IDA RGD PMID:10640775 RGD:61031 NCBI chr 6:127,286,494...147,991,367 JBrowse link
Q Eaex Experimental allergic encephalomyelitis QTL x IDA RGD PMID:10640775 RGD:61031 NCBI chr 5:56,902,367...101,902,367 JBrowse link
Q Eaey Experimental allergic encephalomyelitis QTL y IDA RGD PMID:10640775 RGD:61031 NCBI chr18:48,519,299...62,570,427 JBrowse link
Q Eaez Experimental allergic encephalomyelitis QTL z IDA RGD PMID:10640775 RGD:61031 NCBI chr18:12,597,179...15,099,007 JBrowse link
Q Iddm16 Insulin dependent diabetes mellitus QTL 16 IDA RGD PMID:9571179 RGD:61077
Q Iddm17 Insulin dependent diabetes mellitus QTL 17 IDA RGD PMID:9329965 RGD:634732 NCBI chr11:19,016,272...90,463,843 JBrowse link
Q Iddm25 Insulin dependent diabetes mellitus QTL 25 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 1:198,655,722...244,992,610 JBrowse link
Q Iddm26 Insulin dependent diabetes mellitus QTL 26 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 2:188,838,511...228,984,665 JBrowse link
Q Iddm27 Insulin dependent diabetes mellitus QTL 27 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 3:102,152,812...155,263,151 JBrowse link
Q Iddm28 Insulin dependent diabetes mellitus QTL 28 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 6:66,222,612...75,023,308 JBrowse link
Q Iddm29 Insulin dependent diabetes mellitus QTL 29 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 6:127,286,494...147,249,902 JBrowse link
Q Iddm30 Insulin dependent diabetes mellitus QTL 30 IDA RGD PMID:19168599 RGD:2303106 NCBI chr12:10,175,889...31,975,590 JBrowse link
Q Iddm31 Insulin dependent diabetes mellitus QTL 31 IDA RGD PMID:19168599 RGD:2303106 NCBI chr14:4,833,233...19,909,932 JBrowse link
Q Iddm32 Insulin dependent diabetes mellitus QTL 32 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 2:80,631,950...149,614,623 JBrowse link
Q Iddm33 Insulin dependent diabetes mellitus QTL 33 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 2:221,488,355...254,121,739 JBrowse link
Q Iddm34 Insulin dependent diabetes mellitus QTL 34 IDA RGD PMID:19168599 RGD:2303106 NCBI chr 7:100,028,953...145,729,302 JBrowse link
Q Iddm35 Insulin dependent diabetes mellitus QTL 35 IDA RGD PMID:19168599 RGD:2303106 NCBI chr18:4,407,513...62,570,466 JBrowse link
Q Iddm36 Insulin dependent diabetes mellitus QTL 36 IDA RGD PMID:19168599 RGD:2303106 NCBI chr17:10,529,709...42,542,027 JBrowse link
Q Iddm38 Insulin dependent diabetes mellitus QTL 38 IDA RGD PMID:19351909 RGD:2306526 NCBI chr 4:66,394,000...70,773,654 JBrowse link
Q Iddm39 Insulin dependent diabetes mellitus QTL 39 IDA RGD PMID:19351909 RGD:2306526 NCBI chr 4:78,039,977...78,371,222 JBrowse link
Q Iddm4 Insulin dependent diabetes mellitus QTL 4 IDA RGD PMID:8586150 RGD:625443 NCBI chr18:40,375,769...85,375,769 JBrowse link
Q Iddm5 Insulin dependent diabetes mellitus QTL 5 IDA RGD PMID:8586150 RGD:625443 NCBI chr  X:5,954,078...50,954,078 JBrowse link
Q Iddm54 Insulin dependent diabetes mellitus QTL 54 IDA RGD PMID:24920533 RGD:10043114 NCBI chr 2:149,614,466...205,573,168 JBrowse link
Q Iddm55 Insulin dependent diabetes mellitus QTL 55 IDA RGD PMID:24920533 RGD:10043114 NCBI chr 2:205,572,952...207,612,467 JBrowse link
Q Iddm6 Insulin dependent diabetes mellitus QTL 6 IDA RGD PMID:8586150 RGD:625443
Q Iddm8 Insulin dependent diabetes mellitus QTL 8 IDA RGD PMID:9571179 RGD:61077 NCBI chr 6:132,652,096...138,068,606 JBrowse link
Q Insul15 Insulin level QTL 15 IDA RGD PMID:19584880 RGD:2312642 NCBI chr10:60,875,260...105,875,260 JBrowse link
Q Insul16 Insulin level QTL 16 IDA RGD PMID:19584880 RGD:2312642 NCBI chr16:1,550,187...63,210,301 JBrowse link
Q Scl4 Serum cholesterol level QTL 4 IDA RGD PMID:9633608 RGD:619667 NCBI chr 4:94,414,208...139,414,208 JBrowse link
Q Scl5 Serum cholesterol level QTL 5 IDA RGD PMID:9633608 RGD:619667 NCBI chr 1:258,132,568...282,763,074 JBrowse link
Q Scl62 Serum cholesterol level QTL 62 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:1...39,773,425 JBrowse link
Q Scl63 Serum cholesterol level QTL 63 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:103,141,814...176,418,101 JBrowse link
Q Scl64 Serum cholesterol level QTL 64 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 5:71,154,828...108,092,802 JBrowse link
Q Scl65 Serum cholesterol level QTL 65 IDA RGD PMID:19584880 RGD:2312642 NCBI chr10:60,875,260...105,875,260 JBrowse link
Q Slep7 Serum leptin concentration QTL 7 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:103,141,814...176,418,101 JBrowse link
Q Slep8 Serum leptin concentration QTL 8 IDA RGD PMID:19584880 RGD:2312642 NCBI chr10:60,875,260...105,875,260 JBrowse link
Q Slep9 Serum leptin concentration QTL 9 IDA RGD PMID:19584880 RGD:2312642 NCBI chr16:1,550,187...63,210,301 JBrowse link
Q Stl2 Serum triglyceride level QTL 2 IDA RGD PMID:9633608 RGD:619667 NCBI chr 4:3,047,807...55,324,857 JBrowse link
Q Stl23 Serum triglyceride level QTL 23 IDA RGD PMID:19584880 RGD:2312642 NCBI chr16:1,550,187...63,210,301 JBrowse link

Related Phenotype Data for Term "specific pathogen-free condition" (XCO:0000087)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

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  experimental condition 2376
    control condition 868
      specific pathogen-free condition 51
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