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EXPERIMENTAL CONDITION - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:sensory stimulus
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Accession:XCO:0000047 term browser browse the term
Definition:An action or condition designed to cause the registration or perception of a stimulus and the voyage made by incoming nerve impulses from the sense organs to the nerve centers. A stimulus is anything that excites or incites an organism or part thereof to function, become active, or respond.


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air-jet exposure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Stresp23 Stress response QTL 23 IDA RGD PMID:16239369 RGD:1578503 NCBI chr 1:123,350,408...182,418,476 JBrowse link
audible tone stimulus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr54 Anxiety related response QTL 54 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:114,627,026...159,627,026 JBrowse link
Q Anxrr56 Anxiety related response QTL 56 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:85,253,748...150,276,390 JBrowse link
Q Anxrr57 Anxiety related response QTL 57 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:147,278,504...167,139,601 JBrowse link
auditory stimulus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr21 Anxiety related response QTL 21 IDA RGD PMID:18971309 RGD:2313899 NCBI chr 5:66,174,080...124,160,948 JBrowse link
Q Anxrr23 Anxiety related response QTL 23 IDA RGD PMID:11932246 RGD:625384 NCBI chr15:40,631,268...46,187,442 JBrowse link
Q Ppulsi1 Prepulse inhibition QTL 1 IDA RGD PMID:12426667 RGD:629579 NCBI chr 2:136,916,935...213,594,495 JBrowse link
Q Ppulsi2 Prepulse inhibition QTL 2 IDA RGD PMID:12426667 RGD:629579 NCBI chr18:52,292,875...73,997,283 JBrowse link
tactile electric shock exposure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr21 Anxiety related response QTL 21 IDA RGD PMID:18971309 RGD:2313899 NCBI chr 5:66,174,080...124,160,948 JBrowse link
Q Anxrr22 Anxiety related response QTL 22 IDA RGD PMID:11932246 RGD:625384 NCBI chr10:61,345,276...98,211,570 JBrowse link
Q Anxrr55 Anxiety related response QTL 55 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:32,583,980...114,627,242 JBrowse link
Q Stresp1 Stress response QTL 1 IDA RGD PMID:14722724 RGD:737687 NCBI chr  X:41,304,447...112,935,181 JBrowse link
Q Stresp10 Stress response QTL 10 IDA RGD PMID:15685431 RGD:1358767 NCBI chr 6:1...27,574,569 JBrowse link
Q Stresp11 Stress response QTL 11 IDA RGD PMID:15685431 RGD:1358767 NCBI chr 8:73,473,045...118,473,045 JBrowse link
Q Stresp12 Stress response QTL 12 IDA RGD PMID:15685431 RGD:1358767 NCBI chr13:38,433,408...83,433,408 JBrowse link
Q Stresp13 Stress response QTL 13 IDA RGD PMID:15685431 RGD:1358767
Q Stresp2 Stress response QTL 2 IDA RGD PMID:14722724 RGD:737687 NCBI chr  X:112,934,952...138,400,867 JBrowse link
Q Stresp3 Stress response QTL 3 IDA RGD PMID:14722724 RGD:737687 NCBI chr  X:100,567,703...150,256,146 JBrowse link
Q Stresp8 Stress response QTL 8 IDA RGD PMID:15685431 RGD:1358767 NCBI chr 7:90,482,196...135,012,528 JBrowse link
Q Stresp9 Stress response QTL 9 IDA RGD PMID:15685431 RGD:1358767
visible light stimulus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr22 Anxiety related response QTL 22 IDA RGD PMID:11932246 RGD:625384 NCBI chr10:61,345,276...98,211,570 JBrowse link
Q Anxrr54 Anxiety related response QTL 54 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:114,627,026...159,627,026 JBrowse link
Q Anxrr56 Anxiety related response QTL 56 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:85,253,748...150,276,390 JBrowse link
Q Anxrr57 Anxiety related response QTL 57 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:147,278,504...167,139,601 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  experimental condition 2376
    sensory stimulus 19
      auditory stimulus + 7
      olfactory stimulus 0
      tactile stimulus + 13
      taste stimulus 0
      visual stimulus + 4
paths to the root