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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:integumentary system morphology trait
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Accession:VT:0100020 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the system consisting of the skin and its derivatives.


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coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G a nonagouti ISO Coat colour, agouti OMIA PMID:12692166 PMID:15520882 PMID:15965787 PMID:17630272 PMID:21321476 More... NCBI chr 2:154,950,599...155,051,012
Ensembl chr 2:154,791,402...155,051,012
Ensembl chr 2:154,791,402...155,051,012
JBrowse link
G Defb14 defensin beta 14 ISO Coat colour, dominant black OMIA PMID:12692166 PMID:15649147 PMID:17483404 PMID:17947548 PMID:19197024 More... NCBI chr 8:19,160,244...19,195,309
Ensembl chr 8:19,194,357...19,195,212
JBrowse link
G Mc1r melanocortin 1 receptor ISO Coat colour, melanistic mask OMIA PMID:12692165 PMID:21353269 PMID:29932470 PMID:33672409 NCBI chr 8:123,407,082...123,410,744
Ensembl chr 8:123,407,107...123,410,744
JBrowse link
G Pmel premelanosome protein ISO Coat colour, merle OMIA PMID:330141 PMID:340189 PMID:418699 PMID:3099512 PMID:3998446 More... NCBI chr10:128,695,888...128,720,238
Ensembl chr10:128,704,195...128,720,238
JBrowse link
G Psmb7 proteasome (prosome, macropain) subunit, beta type 7 ISO Coat colour, harlequin OMIA PMID:3270445 PMID:3998446 PMID:18513894 PMID:21256207 PMID:31658272 NCBI chr 2:38,588,046...38,643,952
Ensembl chr 2:38,588,036...38,644,087
JBrowse link
G Raly hnRNP-associated with lethal yellow ISO Coat colour, saddle tan vs black-and-tan OMIA PMID:23519866 PMID:31658272 PMID:33672409 NCBI chr 2:154,790,920...154,871,010
Ensembl chr 2:154,791,096...154,867,261
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 7
    organ system trait 7
      integumentary system trait 6
        integumentary system morphology trait 6
          skin adnexa morphology trait + 6
          skin morphology trait + 0
Path 2
Term Annotations click to browse term
  vertebrate trait 7
    organism subdivision trait 6
      surface structure trait 6
        surface structure morphology trait 6
          integumentary system morphology trait 6
            skin adnexa morphology trait + 6
            skin morphology trait + 0
paths to the root