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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:organism subdivision trait
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Accession:VT:0100003 term browser browse the term
Definition:Any measurable or observable characteristic of an anatomical structure which is a subpart of the whole organism; the mereological sum of these is the whole organism.
Synonyms:xref: TAO:0001308



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coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein IAGP Coat colour, saddle tan vs black-and-tan
Coat colour, agouti
OMIA PMID:8202545 PMID:12692166 PMID:15520882 PMID:15965787 PMID:17630272 More... NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
JBrowse link
G CBD103 beta-defensin 103 IAGP Coat colour, dominant black OMIA PMID:12692166 PMID:15649147 PMID:17483404 PMID:17947548 PMID:19197024 More... NCBI chr16:58,965,216...58,966,773
Ensembl chr16:58,965,216...58,967,712
JBrowse link
G MC1R melanocortin 1 receptor IAGP Coat colour, melanistic mask OMIA PMID:12692165 PMID:21353269 PMID:29932470 PMID:33672409 PMID:34751460 NCBI chr 5:63,694,296...63,695,249 JBrowse link
G PMEL premelanosome protein IAGP Coat colour, merle OMIA PMID:330141 PMID:340189 PMID:418699 PMID:3099512 PMID:3998446 More... NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
JBrowse link
G PSMB7 proteasome 20S subunit beta 7 IAGP Coat colour, harlequin OMIA PMID:3270445 PMID:3998446 PMID:18513894 PMID:21256207 PMID:31658272 More... NCBI chr 9:58,529,646...58,593,016
Ensembl chr 9:58,529,723...58,593,016
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 6
    organism subdivision trait 5
      head and neck integrity trait 0
      head trait + 0
      hip width 0
      rump trait + 0
      surface structure trait + 5
      thorax trait + 0
paths to the root