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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:organism subdivision trait
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Accession:VT:0100003 term browser browse the term
Definition:Any measurable or observable characteristic of an anatomical structure which is a subpart of the whole organism; the mereological sum of these is the whole organism.
Synonyms:xref: TAO:0001308


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coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO Coat colour, saddle tan vs black-and-tan
Coat colour, agouti
OMIA PMID:8202545 PMID:12692166 PMID:15520882 PMID:15965787 PMID:17630272 More... NCBI chrNW_004955422:27,021,810...27,150,339
Ensembl chrNW_004955422:27,020,386...27,057,626
JBrowse link
G Pmel premelanosome protein ISO Coat colour, merle OMIA PMID:330141 PMID:340189 PMID:418699 PMID:3099512 PMID:3998446 More... NCBI chrNW_004955458:3,544,855...3,555,453
Ensembl chrNW_004955458:3,544,961...3,554,619
JBrowse link
G Psmb7 proteasome 20S subunit beta 7 ISO Coat colour, harlequin OMIA PMID:3270445 PMID:3998446 PMID:18513894 PMID:21256207 PMID:31658272 More... NCBI chrNW_004955419:3,706,273...3,761,603
Ensembl chrNW_004955419:3,706,226...3,761,780
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  vertebrate trait 4
    organism subdivision trait 3
      head and neck integrity trait 0
      head trait + 0
      hip width 0
      rump trait + 0
      surface structure trait + 3
      thorax trait + 0
paths to the root