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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:surface structure trait
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Accession:VT:0015052 term browser browse the term
Definition:Any measurable or observable characteristic of the organism subdivision which is the collection of anatomical structures on the body surface.
Synonyms:xref: TAO:0000292

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coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO Coat colour, saddle tan vs black-and-tan
Coat colour, agouti 		OMIA PMID:8202545 PMID:12692166 PMID:15520882 PMID:15965787 PMID:17630272 More... NCBI chrNW_004624842:5,079,499...5,084,933
Ensembl chrNW_004624842:5,079,499...5,084,933 		JBrowse link
G Mc1r melanocortin 1 receptor ISO Coat colour, melanistic mask OMIA PMID:12692165 PMID:21353269 PMID:29932470 PMID:33672409 PMID:34751460 More... NCBI chrNW_004624746:131,356...137,745
Ensembl chrNW_004624746:132,904...133,860 		JBrowse link
G Pmel premelanosome protein ISO Coat colour, merle OMIA PMID:330141 PMID:340189 PMID:418699 PMID:3099512 PMID:3998446 More... NCBI chrNW_004624802:12,073,932...12,092,885
Ensembl chrNW_004624802:12,083,090...12,092,767 		JBrowse link
G Psmb7 proteasome 20S subunit beta 7 ISO Coat colour, harlequin OMIA PMID:3270445 PMID:3998446 PMID:18513894 PMID:21256207 PMID:31658272 More... NCBI chrNW_004624760:10,678,800...10,738,008
Ensembl chrNW_004624760:10,678,673...10,738,009 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 5
    organism subdivision trait 4
      surface structure trait 4
        surface structure development trait + 0
        surface structure morphology trait + 4
        surface structure physiology trait + 0
paths to the root