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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:mammary gland integrity trait
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Accession:VT:0010552 term browser browse the term
Definition:Any measurable or observable characteristic related to the structural soundness of the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat.
Synonyms:xref: EFO:0000305;   EFO:0003014;   EFO:0003869;   EFO:0009443;   EFO:0009781;   EFO:1000649;   EFO:1000650


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mammary gland integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Emca1 Estrogen-induced mammary cancer QTL 1 IDA 4.4 RGD PMID:15611180 RGD:1358124 NCBI chr 5:104,262,817...153,890,625 JBrowse link
Q Emca10 Estrogen-induced mammary cancer QTL 10 IDA 0.048 RGD PMID:18420736 RGD:2292503 NCBI chr 6:22,288,257...27,729,050 JBrowse link
Q Emca11 Estrogen-induced mammary cancer QTL 11 IDA RGD PMID:23151807 RGD:7364727 NCBI chr 5:73,176,602...118,176,602 JBrowse link
Q Emca12 Estrogen-induced mammary cancer QTL 12 IDA RGD PMID:23151807 RGD:7364727 NCBI chr 5:94,034,903...139,034,903 JBrowse link
Q Emca13 Estrogen-induced mammary cancer QTL 13 IDA RGD PMID:23151807 RGD:7364727 NCBI chr 5:14,606,078...59,606,078 JBrowse link
Q Emca2 Estrogen-induced mammary cancer QTL 2 IDA 1.6 RGD PMID:15611180 RGD:1358124 NCBI chr18:65,846,447...86,134,022 JBrowse link
Q Emca4 Estrogen-induced mammary cancer QTL 4 IDA 3.7 RGD PMID:16885383 RGD:1642522 NCBI chr 7:63,889,858...108,889,858 JBrowse link
Q Emca5 Estrogen-induced mammary cancer QTL 5 IDA 3.9 RGD PMID:16885383 RGD:1642522 NCBI chr 3:145,335,553...189,428,310 JBrowse link
Q Emca6 Estrogen-induced mammary cancer QTL 6 IDA 5.8 RGD PMID:16885383 RGD:1642522 NCBI chr 4:45,429,709...157,555,683 JBrowse link
Q Emca7 Estrogen-induced mammary cancer QTL 7 IDA 4.0 RGD PMID:16885383 RGD:1642522 NCBI chr 6:20,859,430...113,082,285 JBrowse link
Q Emca8 Estrogen-induced mammary cancer QTL 8 IDA 4.1 RGD PMID:16885383 RGD:1642522 NCBI chr 5:55,124,766...172,190,305 JBrowse link
Q Mamtr1 Mammary tumor resistance QTL 1 IDA 1.0E-4 RGD PMID:12844486 RGD:631852 NCBI chr 5:17,576,633...62,576,633 JBrowse link
Q Mamtr2 Mammary tumor resistance QTL 2 IDA 1.0E-4 RGD PMID:14522903 RGD:724790 NCBI chr 2:9,623,581...54,623,581 JBrowse link
Q Mamtr3 Mammary tumor resistance QTL 3 IDA 1.0E-4 RGD PMID:14522903 RGD:724790
Q Mamtr4 Mammary tumor resistance QTL 4 IDA 3.0E-4 RGD PMID:14522903 RGD:724790 NCBI chr 2:18,227,137...63,227,137 JBrowse link
Q Mamtr5 Mammary tumor resistance QTL 5 IDA RGD PMID:17230524 RGD:1599390 NCBI chr 5:23,671,493...68,671,493 JBrowse link
Q Mamtr6 Mammary tumor resistance QTL 6 IDA RGD PMID:17230524 RGD:1599390 NCBI chr18:19,553,532...85,493,247 JBrowse link
Q Mamtr7 Mammary tumor resistance QTL 7 IDA 0.003 RGD PMID:19052818 RGD:2302423
Q Mamtr8 Mammary tumor resistance QTL 8 IDA 0.001 RGD PMID:19052818 RGD:2302423 NCBI chr18:31,610,505...85,493,247 JBrowse link
Q Mcs1 Mammary carcinoma susceptibility QTL 1 IDA 4.4 RGD PMID:8168109 RGD:61080 NCBI chr 2:9,623,581...25,054,526 JBrowse link
Q Mcs12 Mammary carcinoma susceptibility QTL 12 IDA 1.0E-4 RGD PMID:16266982 RGD:1559294
Q Mcs13 Mammary carcinoma susceptibility QTL 13 IDA 1.0E-4 RGD PMID:16266982 RGD:1559294
Q Mcs14 Mammary carcinoma susceptibility QTL 14 IDA 1.0E-4 RGD PMID:16266982 RGD:1559294
Q Mcs15 Mammary carcinoma susceptibility QTL 15 IDA 4.5 RGD PMID:16568087 RGD:1581951 NCBI chr10:72,724,423...107,713,808 JBrowse link
Q Mcs16 Mammary carcinoma susceptibility QTL 16 IDA 2.4 RGD PMID:16568087 RGD:1581951 NCBI chr 1:1...26,564,886 JBrowse link
Q Mcs17 Mammary carcinoma susceptibility QTL 17 IDA 3.0 RGD PMID:16568087 RGD:1581951 NCBI chr 1:207,099,883...252,099,883 JBrowse link
Q Mcs18 Mammary carcinoma susceptibility QTL 18 IDA 2.6 RGD PMID:16568087 RGD:1581951 NCBI chr 2:9,623,581...44,538,110 JBrowse link
Q Mcs19 Mammary carcinoma susceptibility QTL 19 IDA 2.5 RGD PMID:16568087 RGD:1581951 NCBI chr 5:82,032,155...127,032,155 JBrowse link
Q Mcs2 Mammary carcinoma susceptibility QTL 2 IDA 3.38 RGD PMID:9584103 RGD:61081 NCBI chr 7:20,920,494...37,412,865 JBrowse link
Q Mcs20 Mammary carcinoma susceptibility QTL 20 IDA 3.0 RGD PMID:16568087 RGD:1581951 NCBI chr 9:21,031,430...49,025,574 JBrowse link
Q Mcs21 Mammary carcinoma susceptibility QTL 21 IDA 3.0 RGD PMID:16568087 RGD:1581951 NCBI chr10:29,377,046...52,699,134 JBrowse link
Q Mcs22 Mammary carcinoma susceptibility QTL 22 IDA 3.3 RGD PMID:16568087 RGD:1581951
Q Mcs23 Mammary carcinoma susceptibility QTL 23 IDA RGD PMID:17404222 RGD:1601189
Q Mcs24 Mammary carcinoma susceptibility QTL 24 IDA RGD PMID:17404222 RGD:1601189 NCBI chr 5:69,835,120...114,835,120 JBrowse link
Q Mcs25 Mammary carcinoma susceptibility QTL 25 IDA 1.0E-4 RGD PMID:20737482 RGD:4143380 NCBI chr 6:71,278,722...116,278,722 JBrowse link
Q Mcs26 Mammary carcinoma susceptibility QTL 26 IDA 1.0E-4 RGD PMID:20737482 RGD:4143380 NCBI chr 6:112,483,610...147,156,653 JBrowse link
Q Mcs27 Mammary carcinoma susceptibility QTL 27 IDA 1.0E-4 RGD PMID:20737482 RGD:4143380 NCBI chr13:45,990,077...50,392,939 JBrowse link
Q Mcs28 Mammary carcinoma susceptibility QTL 28 IDA RGD PMID:21205740 RGD:5684388
Q Mcs29 Mammary carcinoma susceptibility QTL 29 IDA RGD PMID:21205740 RGD:5684388 NCBI chr 5:38,004,331...83,004,331 JBrowse link
Q Mcs3 Mammary carcinoma susceptibility QTL 3 IDA 2.15 RGD PMID:9584103 RGD:61081 NCBI chr 1:111,404,407...142,582,336 JBrowse link
Q Mcs30 Mammary carcinoma susceptibility QTL 30 IDA 8.62 RGD PMID:24023717 RGD:7327193 NCBI chr12:5,633,306...50,633,306 JBrowse link
Q Mcs31 Mammary carcinoma susceptibility QTL 31 IDA 2.98 RGD PMID:23967281 RGD:7794780 NCBI chr 9:85,262,459...118,999,486 JBrowse link
Q Mcs32 Mammary carcinoma susceptibility QTL 32 IDA 2.61 RGD PMID:23967281 RGD:7794780
Q Mcs33 Mammary carcinoma susceptibility QTL 33 IDA 1.93 RGD PMID:23967281 RGD:7794780 NCBI chr 5:136,631,198...172,190,305 JBrowse link
Q Mcs34 Mammary carcinoma susceptibility QTL 34 IDA 1.54 RGD PMID:23967281 RGD:7794780 NCBI chr18:65,635,567...85,897,775 JBrowse link
Q Mcs4 Mammary carcinoma susceptibility QTL 4 IDA 1.1 RGD PMID:9584103 RGD:61081 NCBI chr 8:44,475,043...89,475,043 JBrowse link
Q Mcs5 Mammary carcinoma susceptibility QTL 5 IDA 10.51 RGD PMID:11139513 RGD:62417 NCBI chr 5:60,601,597...137,492,949 JBrowse link
Q Mcs6 Mammary carcinoma susceptibility QTL 6 IDA 2.29 RGD PMID:11139513 RGD:62417 NCBI chr 7:28,624,575...65,788,017 JBrowse link
Q Mcs7 Mammary carcinoma susceptibility QTL 7 IDA 2.38 RGD PMID:11139513 RGD:62417 NCBI chr10:72,724,423...107,713,808 JBrowse link
Q Mcs8 Mammary carcinoma susceptibility QTL 8 IDA 4.28 RGD PMID:11139513 RGD:62417 NCBI chr14:3,957,878...24,886,169 JBrowse link
Q Mcsm1 Mammary carcinoma susceptibility modifier QTL 1 IDA RGD PMID:11139513 RGD:62417 NCBI chr 6:64,367,996...109,367,996 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organ system trait 1991
      endocrine/exocrine system trait 162
        gland morphology trait 157
          mammary gland morphology trait 87
            mammary gland integrity trait 87
Path 2
Term Annotations click to browse term
  vertebrate trait 2911
    organ system trait 1991
      reproductive system trait 109
        reproductive system morphology trait 109
          female reproductive system morphology trait 97
            mammary gland morphology trait 87
              mammary gland integrity trait 87
paths to the root