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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:head trait
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Accession:VT:0005382 term browser browse the term
Definition:Any measurable or observable characteristic related to the portion of the body containing the brain and organs of sight, hearing, taste, and smell.


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lens clarity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arrd3 Age-related retinal degeneration QTL 3 IDA 3.07 RGD PMID:22300709 RGD:7794750 NCBI chr 1:183,970,203...243,914,901 JBrowse link
Q Lecl1 Lens clarity QTL 1 IDA 0.001 RGD PMID:11252169 RGD:68701
Q Lecl2 Lens clarity QTL 2 IDA 0.001 RGD PMID:11252169 RGD:68701
retinal layer morphology trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arrd1 Age-related retinal degeneration QTL 1 IDA 4.89 RGD PMID:22300709 RGD:7794750 NCBI chr 1:100,357,752...183,970,443 JBrowse link
Q Arrd2 Age-related retinal degeneration QTL 2 IDA 7.79 RGD PMID:22300709 RGD:7794750 NCBI chr 1:183,970,203...243,914,901 JBrowse link
uvea integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eau1 Experimental allergic uveoretinitis QTL 1 IDA 3.0E-4 RGD PMID:10323205 RGD:61073 NCBI chr 4:70,362,013...132,642,728 JBrowse link
Q Eau2 Experimental allergic uveoretinitis QTL 2 IDA 5.0E-4 RGD PMID:10323205 RGD:61073 NCBI chr12:8,525,423...28,064,601 JBrowse link
Q Eau3 Experimental allergic uveoretinitis QTL 3 IDA 0.004 RGD PMID:10323205 RGD:61073 NCBI chr10:34,490,559...45,579,777 JBrowse link
Q Eau4 Experimental allergic uveoretinitis QTL 4 IDA 0.0011 RGD PMID:18453595 RGD:2296064 NCBI chr 3:137,398,739...169,034,231 JBrowse link
Q Eau5 Experimental allergic uveoretinitis QTL 5 IDA 0.0021 RGD PMID:18453595 RGD:2296064 NCBI chr 2:202,446,871...237,938,339 JBrowse link
Q Eau6 Experimental allergic uveoretinitis QTL 6 IDA 0.0029 RGD PMID:18453595 RGD:2296064 NCBI chr 7:84,257,275...129,257,275 JBrowse link
Q Eau7 Experimental allergic uveoretinitis QTL 7 IDA 0.0049 RGD PMID:18453595 RGD:2296064 NCBI chr10:27,957,626...34,490,668 JBrowse link
Q Eau8 Experimental allergic uveoretinitis QTL 8 IDA 0.0163 RGD PMID:18453595 RGD:2296064 NCBI chr19:17,154,433...57,337,602 JBrowse link
Q Eau9 Experimental allergic uveoretinitis QTL 9 IDA 0.0169 RGD PMID:18453595 RGD:2296064 NCBI chr10:65,927,233...82,565,079 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organism subdivision trait 211
      head trait 22
        head development trait + 0
        head morphology trait + 22
        head physiology trait + 0
paths to the root