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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:nephron morphology trait
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Accession:VT:0003881 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the filtering unit of the kidney that includes the renal corpuscle, proximal and distal convoluted tubules, loop of Henle, and the collecting tubule.


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kidney glomerulus integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom15 Glomerulus QTL 15 IDA RGD PMID:16482158 RGD:2293335 NCBI chr13:80,403,559...108,770,687 JBrowse link
Q Glom16 Glomerulus QTL 16 IDA RGD PMID:16482158 RGD:2293335 NCBI chr16:1,550,187...49,247,447 JBrowse link
Q Glom24 Glomerulus QTL 24 IDA RGD PMID:16482158 RGD:2293335 NCBI chr 5:101,265,591...141,912,026 JBrowse link
Q Glom27 Glomerulus QTL 27 IDA RGD PMID:22445570 RGD:7207870 NCBI chr13:24,502,279...108,770,533 JBrowse link
Q Rends1 Renal damage susceptibility QTL 1 IDA RGD PMID:10454439 RGD:632218 NCBI chr 1:137,787,261...236,763,528 JBrowse link
Q Rf20 Renal function QTL 20 IDA RGD PMID:14532335 RGD:727992 NCBI chr11:30,435,339...63,186,373 JBrowse link
Q Rf9 Renal function QTL 9 IDA RGD PMID:14532335 RGD:727992 NCBI chr 2:138,901,276...217,498,710 JBrowse link
kidney glomerulus morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom1 Glomerulus QTL 1 IDA RGD PMID:12397040 RGD:634618 NCBI chr  X:82,930,791...127,930,791 JBrowse link
Q Glom10 Glomerulus QTL 10 IDA RGD PMID:16720678 RGD:1581737 NCBI chr11:1...33,867,429 JBrowse link
Q Glom11 Glomerulus QTL 11 IDA RGD PMID:16720678 RGD:1581737
Q Glom12 Glomerulus QTL 12 IDA RGD PMID:16720678 RGD:1581737 NCBI chr 5:34,402,409...79,402,409 JBrowse link
Q Glom13 Glomerulus QTL 13 IDA RGD PMID:16720678 RGD:1581737
Q Glom14 Glomerulus QTL 14 IDA RGD PMID:16720678 RGD:1581737 NCBI chr15:41,068,094...86,068,094 JBrowse link
Q Glom17 Glomerulus QTL 17 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 1:177,235,071...208,786,962 JBrowse link
Q Glom18 Glomerulus QTL 18 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 1:201,358,068...252,480,016 JBrowse link
Q Glom19 Glomerulus QTL 19 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 4:49,906,054...145,611,886 JBrowse link
Q Glom2 Glomerulus QTL 2 IDA RGD PMID:12397040 RGD:634618 NCBI chr 1:243,272,341...282,763,074 JBrowse link
Q Glom20 Glomerulus QTL 20 IDA RGD PMID:18682577 RGD:2312422 NCBI chr11:46,583,209...86,714,631 JBrowse link
Q Glom21 Glomerulus QTL 21 IDA RGD PMID:18682577 RGD:2312422 NCBI chr18:5,430,134...41,781,619 JBrowse link
Q Glom3 Glomerulus QTL 3 IDA RGD PMID:12397040 RGD:634618
Q Glom4 Glomerulus QTL 4 IDA RGD PMID:14638907 RGD:730279 NCBI chr 2:20,276,981...65,276,981 JBrowse link
Q Glom5 Glomerulus QTL 5 IDA RGD PMID:14638907 RGD:730279 NCBI chr 7:106,564,316...145,729,302 JBrowse link
Q Glom6 Glomerulus QTL 6 IDA RGD PMID:14638907 RGD:730279 NCBI chr 9:70,942,881...115,942,881 JBrowse link
Q Glom7 Glomerulus QTL 7 IDA RGD PMID:14638907 RGD:730279 NCBI chr 6:75,449,871...120,449,871 JBrowse link
Q Glom8 Glomerulus QTL 8 IDA RGD PMID:14638907 RGD:730279 NCBI chr 6:91,703,409...136,703,409 JBrowse link
Q Glom9 Glomerulus QTL 9 IDA RGD PMID:16720678 RGD:1581737 NCBI chr 2:95,946,719...140,946,719 JBrowse link
Q Rf57 Renal function QTL 57 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 5:61,086,653...93,273,130 JBrowse link
Q Rf58 Renal function QTL 58 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 7:55,072,862...123,602,998 JBrowse link

Term paths to the root
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  vertebrate trait 2379
    organ system trait 1548
      urinary system trait 247
        urinary system morphology trait 228
          kidney morphology trait 117
            nephron morphology trait 28
              kidney corpuscle morphology trait + 28
              kidney tubule morphology trait + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.