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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:brain morphology trait
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Accession:VT:0002152 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
Comment:pslim term
Synonyms:xref: EFO:0008368;   EFO:0008370;   EFO:0010602


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brain integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Toxo1 Toxoplasma gondii resistance QTL 1 IDA RGD PMID:16407112 RGD:1578521 NCBI chr10:52,200,030...59,378,278 JBrowse link
Q Vie1 Viral induced encephalitis QTL 1 IDA 26.4 RGD PMID:22761571 RGD:7240516 NCBI chr 4:34,430,484...82,490,359 JBrowse link
Q Vie2 Viral induced encephalitis QTL 2 IDA 4.1 RGD PMID:22761571 RGD:7240516 NCBI chr 3:145,956,084...169,034,231 JBrowse link
Q Vie3 Viral induced encephalitis QTL 3 IDA 2.6 RGD PMID:22761571 RGD:7240516 NCBI chr 6:96,833,997...140,994,061 JBrowse link
Q Vie4 Viral induced encephalitis QTL 4 IDA 7.3 RGD PMID:22761571 RGD:7240516 NCBI chr 4:62,933,508...82,490,359 JBrowse link
Q Vie5 Viral induced encephalitis QTL 5 IDA 25.3 RGD PMID:22761571 RGD:7240516 NCBI chr 4:34,430,484...82,490,359 JBrowse link
brain ventricle morphology trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bvd1 Brain ventricular dilatation QTL 1 IDA 0.001 3.73 RGD PMID:15473982 RGD:1302890 NCBI chr 9:75,712,843...111,552,878 JBrowse link
Q Bvd2 Brain ventricular dilatation QTL 2 IDA 0.001 6.36 RGD PMID:15473982 RGD:1302890 NCBI chr10:93,223,816...107,057,807 JBrowse link
Q Bvd3 Brain ventricular dilatation QTL 3 IDA 0.001 3.64 RGD PMID:15473982 RGD:1302890 NCBI chr11:69,446,070...82,846,715 JBrowse link
Q Bvd4 Brain ventricular dilatation QTL 4 IDA 0.001 5.31 RGD PMID:15473982 RGD:1302890 NCBI chr17:53,498,828...82,479,847 JBrowse link
Q Bvd5 Brain ventricular dilatation QTL 5 IDA 0.001 3.51 RGD PMID:15473982 RGD:1302890 NCBI chr17:31,990,784...81,292,925 JBrowse link
Q Bvd6 Brain ventricular dilatation QTL 6 IDA 1.0E-4 3.1 RGD PMID:11178739 RGD:68693 NCBI chr11:66,113,321...82,169,223 JBrowse link
cerebrum integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp49 Blood pressure QTL 49 IDA 16.6 RGD PMID:9241273 RGD:61056 NCBI chr 5:60,293,434...98,603,051 JBrowse link
Q Strs1 Sensitivity to stroke QTL 1 IDA 7.4 RGD PMID:8696337 RGD:61093 NCBI chr 1:121,767,634...166,767,634 JBrowse link
Q Strs2 Sensitivity to stroke QTL 2 IDA 4.7 RGD PMID:8696337 RGD:61093 NCBI chr 5:135,929,696...166,875,058 JBrowse link
Q Strs3 Sensitivity to stroke QTL 3 IDA 3.0 RGD PMID:8696337 RGD:61093 NCBI chr 4:40,433,388...85,433,388 JBrowse link
Q Strs4 Sensitivity to stroke QTL 4 IDA 8.7 RGD PMID:23690346 RGD:7411685 NCBI chr 1:78,430,536...123,430,536 JBrowse link
Q Strs5 Sensitivity to stroke QTL 5 IDA 9.4 RGD PMID:23690346 RGD:7411685 NCBI chr18:49,999,958...65,845,095 JBrowse link
Q Strs6 Sensitivity to stroke QTL 6 IDA 3.9 RGD PMID:23690346 RGD:7411685 NCBI chr 5:134,972,980...138,113,556 JBrowse link
Q Strs7 Sensitivity to stroke QTL 7 IDA 3.8 RGD PMID:23690346 RGD:7411685 NCBI chr15:40,289,901...49,308,583 JBrowse link
pituitary gland mass term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Edpm1 Estrogen-dependent pituitary mass QTL 1 IDA 0.05 4.0 RGD PMID:9337394 RGD:61074 NCBI chr 2:35,134,841...88,029,593 JBrowse link
Q Edpm10 Estrogen-dependent pituitary mass QTL 10 IDA 2.83 RGD PMID:9337394 RGD:61074
Q Edpm11 Estrogen-dependent pituitary mass QTL 11 IDA 2.5 RGD PMID:11003699 RGD:629550 NCBI chr 9:1...43,718,459 JBrowse link
Q Edpm12 Estrogen-dependent pituitary mass QTL 12 IDA 3.2 RGD PMID:11003699 RGD:629550 NCBI chr  X:2,927,898...47,927,898 JBrowse link
Q Edpm2 Estrogen-dependent pituitary mass QTL 2 IDA 0.86 4.42 RGD PMID:9337394 RGD:61074 NCBI chr 2:76,539,322...202,447,032 JBrowse link
Q Edpm3 Estrogen-dependent pituitary mass QTL 3 IDA 0.038 7.05 RGD PMID:9337394 RGD:61074 NCBI chr 3:53,184,692...89,878,207 JBrowse link
Q Edpm5 Estrogen-dependent pituitary mass QTL 5 IDA 0.92 4.5 RGD PMID:9337394 RGD:61074 NCBI chr 5:68,984,307...104,251,008 JBrowse link
Q Edpm9 Estrogen-dependent pituitary mass QTL 9 IDA 0.05 3.43 RGD PMID:9337394 RGD:61074 NCBI chr 9:63,869,687...108,869,687 JBrowse link
Q Ept1 Estrogen-induced pituitary tumorigenesis QTL 1 IDA 4.4 RGD PMID:15687265 RGD:1334449 NCBI chr 6:9,843,312...20,338,915 JBrowse link
Q Ept10 Estrogen-induced pituitary tumorigenesis QTL 10 IDA 3.8 RGD PMID:15687265 RGD:1334449 NCBI chr 1:192,825,253...243,914,732 JBrowse link
Q Ept13 Estrogen-induced pituitary tumorigenesis QTL 13 IDA 3.4 RGD PMID:15687265 RGD:1334449 NCBI chr 1:77,494,165...122,494,165 JBrowse link
Q Ept15 Estrogen-induced pituitary tumorigenesis QTL 15 IDA 4.4 RGD PMID:18420736 RGD:2292503 NCBI chr 6:9,843,312...20,338,915 JBrowse link
Q Ept16 Estrogen-induced pituitary tumorigenesis QTL 16 IDA 8.3 RGD PMID:18420736 RGD:2292503 NCBI chr 3:47,233,430...110,362,260 JBrowse link
Q Ept17 Estrogen-induced pituitary tumorigenesis QTL 17 IDA 6.7 RGD PMID:18420736 RGD:2292503 NCBI chr 3:6,537,645...10,778,823 JBrowse link
Q Ept18 Estrogen-induced pituitary tumorigenesis QTL 18 IDA 3.9 RGD PMID:18420736 RGD:2292503 NCBI chr10:73,453,136...96,120,911 JBrowse link
Q Ept2 Estrogen-induced pituitary tumorigenesis QTL 2 IDA 8.3 RGD PMID:15687265 RGD:1334449 NCBI chr 3:47,233,430...110,362,260 JBrowse link
Q Ept5 Estrogen-induced pituitary tumorigenesis QTL 5 IDA 3.8 RGD PMID:17876666 RGD:1642526 NCBI chr 4:83,428,419...177,635,233 JBrowse link
Q Ept6 Estrogen-induced pituitary tumorigenesis QTL 6 IDA 6.7 RGD PMID:15687265 RGD:1334449 NCBI chr 3:6,537,645...10,778,823 JBrowse link
Q Ept7 Estrogen-induced pituitary tumorigenesis QTL 7 IDA 3.7 RGD PMID:17876666 RGD:1642526 NCBI chr 7:62,004,452...101,773,158 JBrowse link
Q Ept9 Estrogen-induced pituitary tumorigenesis QTL 9 IDA 3.9 RGD PMID:15687265 RGD:1334449 NCBI chr10:73,453,136...96,120,911 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organ system trait 1991
      nervous/sensory system trait 172
        nervous system morphology trait 150
          brain morphology trait 59
            brain cell morphology trait 0
            brain commissure morphology trait + 0
            brain integrity trait + 10
            brain interneuron morphology trait 0
            brain molecular composition trait + 0
            brain size trait + 0
            brain ventricle/choroid plexus morphology trait + 9
            brainstem morphology trait 0
            forebrain morphology trait + 41
            hindbrain morphology trait + 0
            midbrain morphology trait + 0
            postnatal subventricular zone morphology trait 0
paths to the root