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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:hepatobiliary system morphology trait
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Accession:VT:0002138 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the tissues of the liver, gall bladder, or bile ducts.
Comment:pslim term
Synonyms:exact_synonym: hepatic system morphology trait


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liver cholesterol amount term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hpcl1 Hepatic cholesterol level QTL 1 IDA 3.3 RGD PMID:9600105 RGD:629576 NCBI chr10:35,893,263...52,293,000 JBrowse link
Q Hpcl2 Hepatic cholesterol level QTL 2 IDA RGD PMID:18071061 RGD:1643359 NCBI chr10:45,529,164...96,099,749 JBrowse link
liver copper amount term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IDA 3.0 RGD PMID:11741328 RGD:619607
Q Hcuc2 Hepatic copper content QTL 2 IDA 2.8 RGD PMID:11741328 RGD:619607
Q Hcuc3 Hepatic copper content QTL 3 IDA 3.87 RGD PMID:12094018 RGD:629572 NCBI chr 2:212,145,502...231,732,847 JBrowse link
Q Hcuc4 Hepatic copper content QTL 4 IDA 4.15 RGD PMID:12094018 RGD:629572 NCBI chr10:67,439,473...73,950,209 JBrowse link
liver integrity trait term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf2 Gastrointestinal inflammation QTL 2 IDA 0.005 3.21 RGD PMID:19526527 RGD:2316974 NCBI chr 8:12,964,165...57,964,165 JBrowse link
Q Ginf3 Gastrointestinal inflammation QTL 3 IDA 0.005 2.89 RGD PMID:19526527 RGD:2316974 NCBI chr17:54,829,503...93,515,804 JBrowse link
Q Hcar1 Hepatocarcinoma resistance QTL 1 IDA 1.0E-4 3.4 RGD PMID:10493520 RGD:619598 NCBI chr10:6,661,118...35,509,383 JBrowse link
Q Hcar10 Hepatocarcinoma resistance QTL 10 IDA 2.9 RGD PMID:12154055 RGD:629566 NCBI chr 8:49,610,204...68,373,388 JBrowse link
Q Hcar11 Hepatocarcinoma resistance QTL 11 IDA 4.4 RGD PMID:12154055 RGD:629566 NCBI chr 6:46,050,607...116,278,722 JBrowse link
Q Hcar12 Hepatocarcinoma resistance QTL 12 IDA 2.6 RGD PMID:12154055 RGD:629566 NCBI chr 3:49,872,657...138,829,559 JBrowse link
Q Hcar13 Hepatocarcinoma resistance QTL 13 IDA 4.3 RGD PMID:15185337 RGD:737884 NCBI chr 4:1...33,538,816 JBrowse link
Q Hcar14 Hepatocarcinoma resistance QTL 14 IDA 4.3 RGD PMID:15185337 RGD:737884 NCBI chr18:57,825,243...85,493,247 JBrowse link
Q Hcar15 Hepatocarcinoma resistance QTL 15 IDA 0.05 RGD PMID:15771619 RGD:1358145 NCBI chr 1:162,548,015...270,518,180 JBrowse link
Q Hcar2 Hepatocarcinoma resistance QTL 2 IDA 3.0E-4 3.1 RGD PMID:10493520 RGD:619598 NCBI chr 4:84,349,032...129,349,032 JBrowse link
Q Hcar3 Hepatocarcinoma resistance QTL 3 IDA 5.0E-4 2.9 RGD PMID:10493520 RGD:619598 NCBI chr 8:62,982,864...107,982,864 JBrowse link
Q Hcar4 Hepatocarcinoma resistance QTL 4 IDA 4.6 RGD PMID:10850431 RGD:619609 NCBI chr 1:202,851,915...223,964,440 JBrowse link
Q Hcar5 Hepatocarcinoma resistance QTL 5 IDA 8.0 RGD PMID:10850431 RGD:619609 NCBI chr 1:223,964,326...236,074,012 JBrowse link
Q Hcar6 Hepatocarcinoma resistance QTL 6 IDA RGD PMID:10850431 RGD:619609
Q Hcar7 Hepatocarcinoma resistance QTL 7 IDA 7.8 RGD PMID:10850431 RGD:619609 NCBI chr 4:61,041,057...94,638,356 JBrowse link
Q Hcar8 Hepatocarcinoma resistance QTL 8 IDA 5.8 RGD PMID:10850431 RGD:619609 NCBI chr 4:124,700,988...169,700,988 JBrowse link
Q Hcar9 Hepatocarcinoma resistance QTL 9 IDA 3.7 RGD PMID:12154055 RGD:629566 NCBI chr 4:106,848,959...168,870,974 JBrowse link
Q Hcas1 Hepatocarcinoma susceptibility QTL 1 IDA 0.001 3.9 RGD PMID:10493520 RGD:619598 NCBI chr 7:93,302,009...131,686,183 JBrowse link
Q Hcas2 Hepatocarcinoma susceptibility QTL 2 IDA 1.0E-4 3.0 RGD PMID:10493520 RGD:619598 NCBI chr 1:7,746,118...52,746,118 JBrowse link
Q Hcas3 Hepatocarcinoma susceptibility QTL 3 IDA 4.9 RGD PMID:12154055 RGD:629566 NCBI chr 1:153,679,879...232,414,077 JBrowse link
Q Hcas4 Hepatocarcinoma susceptibility QTL 4 IDA 4.43 RGD PMID:12154055 RGD:629566 NCBI chr16:4,234,212...53,708,481 JBrowse link
Q Hcas5 Hepatocarcinoma susceptibility QTL 5 IDA 3.12 RGD PMID:15185337 RGD:737884 NCBI chr 1:185,857,683...270,518,180 JBrowse link
Q Hcas6 Hepatocarcinoma susceptibility QTL 6 IDA 2.93 RGD PMID:15185337 RGD:737884 NCBI chr14:39,411,170...87,582,095 JBrowse link
Q Hcas7 Hepatocarcinoma susceptibility QTL 7 IDA 2.91 RGD PMID:15185337 RGD:737884 NCBI chr15:2,315,759...53,331,089 JBrowse link
Q Hcas8 Hepatocarcinoma susceptibility QTL 8 IDA RGD PMID:17079458 RGD:1599590 NCBI chr16:16,278,184...27,244,292 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA 0.001 3.85 RGD PMID:12672032 RGD:629574 NCBI chr 7:36,178,764...81,178,764 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA 5.0E-4 2.9 RGD PMID:12672032 RGD:629574 NCBI chr 1:243,953,669...270,518,180 JBrowse link
Q Lnnr3 Liver neoplastic nodule remodeling QTL 3 IDA 2.94 RGD PMID:15185337 RGD:737884 NCBI chr 2:1...42,977,529 JBrowse link
Q Lnnr4 Liver neoplastic nodule remodeling QTL 4 IDA 3.64 RGD PMID:15185337 RGD:737884 NCBI chr13:1...34,785,618 JBrowse link
Q Lnnr5 Liver neoplastic nodule remodeling QTL 5 IDA 3.29 RGD PMID:15185337 RGD:737884 NCBI chr13:62,424,592...88,113,509 JBrowse link
Q Lnnr6 Liver neoplastic nodule remodeling QTL 6 IDA 3.3 RGD PMID:15185337 RGD:737884 NCBI chr13:65,613,454...109,350,286 JBrowse link
liver mass term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Livw1 Liver weight QTL 1 IDA 3.0E-4 3.6 RGD PMID:15728334 RGD:1580752 NCBI chr 1:170,078,537...182,384,005 JBrowse link
Q Livw2 Liver weight QTL 2 IDA 4.0E-4 3.5 RGD PMID:15728334 RGD:1580752 NCBI chr 5:104,018,576...124,314,782 JBrowse link
Q Livw3 Liver weight QTL 3 IDA 0.01 2.43 RGD PMID:19526527 RGD:2316974 NCBI chr 8:12,964,165...57,964,165 JBrowse link
Q Livw4 Liver weight QTL 4 IDA 3.8 RGD PMID:25296178 RGD:10402111 NCBI chr 7:72,725,037...117,725,037 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organ system trait 1991
      alimentary system trait 127
        hepatobiliary system morphology trait 62
          biliary tract morphology trait + 0
          liver morphology trait + 62
paths to the root