Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:hepatobiliary system morphology trait
go back to main search page
Accession:VT:0002138 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the tissues of the liver, gall bladder, or bile ducts.
Comment:pslim term
Synonyms:exact_synonym: hepatic system morphology trait

show annotations for term's descendants           Sort by:
 
hepatic copper amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IDA RGD PMID:11741328 RGD:619607
Q Hcuc2 Hepatic copper content QTL 2 IDA RGD PMID:11741328 RGD:619607 NCBI chr16:1...41,240,957 JBrowse link
Q Hcuc3 Hepatic copper content QTL 3 IDA RGD PMID:12094018 RGD:629572 NCBI chr 2:245,893,572...266,435,125 JBrowse link
Q Hcuc4 Hepatic copper content QTL 4 IDA RGD PMID:12094018 RGD:629572 NCBI chr10:69,348,459...75,983,662 JBrowse link
liver cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hpcl1 Hepatic cholesterol level QTL 1 IDA RGD PMID:9600105 RGD:629576 NCBI chr10:36,584,373...53,645,194 JBrowse link
Q Hpcl2 Hepatic cholesterol level QTL 2 IDA RGD PMID:18071061 RGD:1643359 NCBI chr10:46,593,021...98,939,209 JBrowse link
liver integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf2 Gastrointestinal inflammation QTL 2 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:7,368,076...52,368,076 JBrowse link
Q Ginf3 Gastrointestinal inflammation QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr17:53,871,488...90,843,779 JBrowse link
Q Hcar1 Hepatocarcinoma resistance QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr10:6,229,289...36,185,929 JBrowse link
Q Hcar10 Hepatocarcinoma resistance QTL 10 IDA RGD PMID:12154055 RGD:629566 NCBI chr 8:44,219,197...89,542,960 JBrowse link
Q Hcar11 Hepatocarcinoma resistance QTL 11 IDA RGD PMID:12154055 RGD:629566 NCBI chr 6:86,422,697...115,379,601 JBrowse link
Q Hcar12 Hepatocarcinoma resistance QTL 12 IDA RGD PMID:12154055 RGD:629566 NCBI chr 3:30,114,912...123,700,444 JBrowse link
Q Hcar13 Hepatocarcinoma resistance QTL 13 IDA RGD PMID:15185337 RGD:737884 NCBI chr 4:1...31,554,484 JBrowse link
Q Hcar14 Hepatocarcinoma resistance QTL 14 IDA RGD PMID:15185337 RGD:737884 NCBI chr18:53,033,494...87,080,053 JBrowse link
Q Hcar15 Hepatocarcinoma resistance QTL 15 IDA RGD PMID:15771619 RGD:1358145 NCBI chr 1:163,796,316...282,763,074 JBrowse link
Q Hcar2 Hepatocarcinoma resistance QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 4:79,555,067...124,555,067 JBrowse link
Q Hcar3 Hepatocarcinoma resistance QTL 3 IDA RGD PMID:10493520 RGD:619598 NCBI chr 8:58,425,510...106,526,740 JBrowse link
Q Hcar4 Hepatocarcinoma resistance QTL 4 IDA RGD PMID:10850431 RGD:619609 NCBI chr 1:210,960,636...236,763,528 JBrowse link
Q Hcar5 Hepatocarcinoma resistance QTL 5 IDA RGD PMID:10850431 RGD:619609 NCBI chr 1:236,763,415...247,065,599 JBrowse link
Q Hcar6 Hepatocarcinoma resistance QTL 6 IDA RGD PMID:10850431 RGD:619609
Q Hcar7 Hepatocarcinoma resistance QTL 7 IDA RGD PMID:10850431 RGD:619609 NCBI chr 4:71,476,518...116,476,518 JBrowse link
Q Hcar8 Hepatocarcinoma resistance QTL 8 IDA RGD PMID:10850431 RGD:619609 NCBI chr 4:123,478,354...168,478,354 JBrowse link
Q Hcar9 Hepatocarcinoma resistance QTL 9 IDA RGD PMID:12154055 RGD:629566 NCBI chr 4:105,971,071...168,047,091 JBrowse link
Q Hcas1 Hepatocarcinoma susceptibility QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr 7:100,160,423...140,335,001 JBrowse link
Q Hcas2 Hepatocarcinoma susceptibility QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 1:5,655,769...122,614,963 JBrowse link
Q Hcas3 Hepatocarcinoma susceptibility QTL 3 IDA RGD PMID:12154055 RGD:629566 NCBI chr 1:156,446,196...243,311,614 JBrowse link
Q Hcas4 Hepatocarcinoma susceptibility QTL 4 IDA RGD PMID:12154055 RGD:629566 NCBI chr16:5,013,802...50,169,318 JBrowse link
Q Hcas5 Hepatocarcinoma susceptibility QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr 1:191,825,895...279,986,079 JBrowse link
Q Hcas6 Hepatocarcinoma susceptibility QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr14:61,873,323...88,870,994 JBrowse link
Q Hcas7 Hepatocarcinoma susceptibility QTL 7 IDA RGD PMID:15185337 RGD:737884 NCBI chr15:2,327,877...53,535,766 JBrowse link
Q Hcas8 Hepatocarcinoma susceptibility QTL 8 IDA RGD PMID:17079458 RGD:1599590 NCBI chr16:1...24,228,366 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA RGD PMID:12672032 RGD:629574 NCBI chr 7:40,872,682...85,872,682 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA RGD PMID:12672032 RGD:629574 NCBI chr 1:255,728,828...282,763,074 JBrowse link
Q Lnnr3 Liver neoplastic nodule remodeling QTL 3 IDA RGD PMID:15185337 RGD:737884 NCBI chr 2:1...41,179,397 JBrowse link
Q Lnnr4 Liver neoplastic nodule remodeling QTL 4 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:1...47,622,148 JBrowse link
Q Lnnr5 Liver neoplastic nodule remodeling QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:65,008,245...91,629,354 JBrowse link
Q Lnnr6 Liver neoplastic nodule remodeling QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:80,403,559...91,629,354 JBrowse link
liver mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Livw1 Liver weight QTL 1 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 1:166,100,317...188,289,386 JBrowse link
Q Livw2 Liver weight QTL 2 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 5:102,498,468...123,852,688 JBrowse link
Q Livw3 Liver weight QTL 3 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:7,368,076...52,368,076 JBrowse link
Q Livw4 Liver weight QTL 4 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 7:78,758,303...80,297,776 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      alimentary system trait 80
        hepatobiliary system morphology trait 41
          biliary tract morphology trait + 0
          liver morphology trait + 41
paths to the root