Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:male reproductive system morphology trait
go back to main search page
Accession:VT:0001145 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organs associated with producing offspring in the gender that produces spermatozoa.


show annotations for term's descendants           Sort by:
prostate integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Prcr1 Prostate cancer resistance QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr 2:72,532,993...157,142,209 JBrowse link
Q Prcr2 Prostate cancer resistance QTL 2 IDA RGD PMID:15805257 RGD:1358944 NCBI chr 1:20,763,158...44,095,856 JBrowse link
Q Prcs1 Prostate cancer susceptibility QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr19:15,114,598...34,521,833 JBrowse link
Q Prcs2 Prostate cancer susceptibility QTL 2 IDA RGD PMID:15805257 RGD:1358944 NCBI chr20:4,606,607...17,617,956 JBrowse link
seminal gland mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Inf1 Infertility severity QTL 1 IDA RGD PMID:10615258 RGD:631224 NCBI chr 8:22,662,330...67,662,330 JBrowse link
testis integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tescar1 Testicular tumor resistance QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr11:1,041,931...66,113,562 JBrowse link
testis mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Teswt1 Testicular weight QTL 1 IDA RGD PMID:16651691 RGD:1625009 NCBI chr 7:80,221,299...94,811,326 JBrowse link
Q Teswt2 Testicular weight QTL 2 IDA RGD PMID:16651691 RGD:1625009 NCBI chr 1:197,697,768...238,755,659 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2911
    organ system trait 1991
      reproductive system trait 109
        reproductive system morphology trait 109
          male reproductive system morphology trait 13
            bulbourethral gland morphology trait + 0
            epididymis morphology trait + 0
            penis morphology trait + 0
            prostate morphology trait + 6
            scrotum morphology trait + 0
            seminal gland morphology trait + 3
            testis morphology trait + 6
            vas deferens morphology trait 0
paths to the root