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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:diencephalon morphology trait
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Accession:VT:0000830 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex.


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diencephalon size trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q GWAS1215581_H cholesteryl ester 14:0 measurement QTL GWAS1215581 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:116,780,399...116,780,400 JBrowse link
Q GWAS1215982_H cholesteryl ester 14:0 measurement QTL GWAS1215982 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:116,786,845...116,786,846 JBrowse link
Q GWAS1216027_H cholesteryl ester 14:0 measurement QTL GWAS1216027 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,830,500...61,830,501 JBrowse link
Q GWAS1216028_H cholesteryl ester 14:0 measurement QTL GWAS1216028 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,842,278...61,842,279 JBrowse link
Q GWAS1394513_H cholesteryl ester 14:0 measurement QTL GWAS1394513 (human) IAGP GWAS_CATALOG PMID:35668104 NCBI chr11:117,148,048...117,148,049 JBrowse link
Q GWAS1471527_H cholesteryl ester 14:0 measurement QTL GWAS1471527 (human) IAGP GWAS_CATALOG PMID:23823483 NCBI chr 1:200,687,263...200,687,264 JBrowse link
Q GWAS1471528_H cholesteryl ester 14:0 measurement QTL GWAS1471528 (human) IAGP GWAS_CATALOG PMID:23823483 NCBI chr 2:164,977,726...164,977,727 JBrowse link
Q GWAS1471529_H cholesteryl ester 14:0 measurement QTL GWAS1471529 (human) IAGP GWAS_CATALOG PMID:23823483 NCBI chr12:77,507,660...77,507,661 JBrowse link
Q GWAS1471758_H Crohn's disease QTL GWAS1471758 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,790,331...61,790,332 JBrowse link
Q GWAS1511753_H phosphatidylinositol measurement QTL GWAS1511753 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,790,354...61,790,355 JBrowse link
Q GWAS1513033_H sphingomyelin measurement QTL GWAS1513033 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,796,827...61,796,828 JBrowse link
Q GWAS1513363_H sphingomyelin measurement QTL GWAS1513363 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,783,884...61,783,885 JBrowse link
Q GWAS1523180_H cholesteryl ester 14:0 measurement QTL GWAS1523180 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,802,358...61,802,359 JBrowse link
Q GWAS1523181_H cholesteryl ester 14:0 measurement QTL GWAS1523181 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,803,311...61,803,312 JBrowse link
Q GWAS1523182_H cholesteryl ester 14:0 measurement QTL GWAS1523182 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,804,006...61,804,007 JBrowse link
Q GWAS1523183_H cholesteryl ester 14:0 measurement QTL GWAS1523183 (human) IAGP GWAS_CATALOG PMID:34503513 NCBI chr11:61,855,668...61,855,669 JBrowse link
Q GWAS698099_H cholesteryl ester 14:0 measurement QTL GWAS698099 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr 3:56,006,952...56,006,953 JBrowse link
Q GWAS698766_H cholesteryl ester 14:0 measurement QTL GWAS698766 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr19:48,219,321...48,219,322 JBrowse link
Q GWAS873714_H cholesteryl ester 14:0 measurement QTL GWAS873714 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr 7:158,125,890...158,125,891 JBrowse link
Q GWAS873715_H cholesteryl ester 14:0 measurement QTL GWAS873715 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr 1:241,387,108...241,387,109 JBrowse link
Q GWAS873717_H cholesteryl ester 14:0 measurement QTL GWAS873717 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr 8:71,842,404...71,842,405 JBrowse link
Q GWAS873718_H cholesteryl ester 14:0 measurement QTL GWAS873718 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr11:23,039,745...23,039,746 JBrowse link
Q GWAS874013_H cholesteryl ester 14:0 measurement QTL GWAS874013 (human) IAGP Based on the EFO term ID GWAS_CATALOG PMID:23823483 NCBI chr13:72,225,036...72,225,037 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 86781
    organ system trait 42013
      nervous/sensory system trait 514
        nervous system morphology trait 472
          brain morphology trait 314
            forebrain morphology trait 192
              diencephalon morphology trait 23
                diencephalon cell quantity 0
                diencephalon size trait + 23
                epithalamus morphology trait + 0
                globus pallidus morphology trait 0
                hypothalamus morphology trait + 0
                mammillary body morphology trait 0
                pituitary gland morphology trait + 0
                subthalamus morphology trait + 0
                thalamus morphology trait + 0
                third ventricle morphology trait + 0
paths to the root