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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:forebrain morphology trait
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Accession:VT:0000783 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube from which the diencephalon and telencephalon are derived.



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cerebrum integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp49 Blood pressure QTL 49 IDA RGD PMID:9241273 RGD:61056 NCBI chr 5:60,293,434...98,603,051 JBrowse link
Q Strs1 Sensitivity to stroke QTL 1 IDA RGD PMID:8696337 RGD:61093 NCBI chr 1:121,767,634...166,767,634 JBrowse link
Q Strs2 Sensitivity to stroke QTL 2 IDA RGD PMID:8696337 RGD:61093 NCBI chr 5:135,929,696...166,875,058 JBrowse link
Q Strs3 Sensitivity to stroke QTL 3 IDA RGD PMID:8696337 RGD:61093 NCBI chr 4:40,433,388...85,433,388 JBrowse link
Q Strs4 Sensitivity to stroke QTL 4 IDA RGD PMID:23690346 RGD:7411685 NCBI chr 1:78,430,536...123,430,536 JBrowse link
Q Strs5 Sensitivity to stroke QTL 5 IDA RGD PMID:23690346 RGD:7411685 NCBI chr18:49,999,958...65,845,095 JBrowse link
Q Strs6 Sensitivity to stroke QTL 6 IDA RGD PMID:23690346 RGD:7411685 NCBI chr 5:134,972,980...138,113,556 JBrowse link
Q Strs7 Sensitivity to stroke QTL 7 IDA RGD PMID:23690346 RGD:7411685 NCBI chr15:40,289,901...49,308,583 JBrowse link
pituitary gland mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Edpm1 Estrogen-dependent pituitary mass QTL 1 IDA RGD PMID:9337394 RGD:61074 NCBI chr 2:35,134,841...88,029,593 JBrowse link
Q Edpm10 Estrogen-dependent pituitary mass QTL 10 IDA RGD PMID:9337394 RGD:61074
Q Edpm11 Estrogen-dependent pituitary mass QTL 11 IDA RGD PMID:11003699 RGD:629550 NCBI chr 9:1...43,718,459 JBrowse link
Q Edpm12 Estrogen-dependent pituitary mass QTL 12 IDA RGD PMID:11003699 RGD:629550 NCBI chr  X:2,927,898...47,927,898 JBrowse link
Q Edpm2 Estrogen-dependent pituitary mass QTL 2 IDA RGD PMID:9337394 RGD:61074 NCBI chr 2:76,539,322...202,447,032 JBrowse link
Q Edpm3 Estrogen-dependent pituitary mass QTL 3 IDA RGD PMID:9337394 RGD:61074 NCBI chr 3:53,184,692...89,878,207 JBrowse link
Q Edpm5 Estrogen-dependent pituitary mass QTL 5 IDA RGD PMID:9337394 RGD:61074 NCBI chr 5:68,984,307...104,251,008 JBrowse link
Q Edpm9 Estrogen-dependent pituitary mass QTL 9 IDA RGD PMID:9337394 RGD:61074 NCBI chr 9:63,869,687...108,869,687 JBrowse link
Q Ept1 Estrogen-induced pituitary tumorigenesis QTL 1 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 6:9,843,312...20,338,915 JBrowse link
Q Ept10 Estrogen-induced pituitary tumorigenesis QTL 10 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 1:192,825,253...243,914,732 JBrowse link
Q Ept13 Estrogen-induced pituitary tumorigenesis QTL 13 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 1:77,494,165...122,494,165 JBrowse link
Q Ept15 Estrogen-induced pituitary tumorigenesis QTL 15 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 6:9,843,312...20,338,915 JBrowse link
Q Ept16 Estrogen-induced pituitary tumorigenesis QTL 16 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:47,233,430...110,362,260 JBrowse link
Q Ept17 Estrogen-induced pituitary tumorigenesis QTL 17 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 3:6,537,645...10,778,823 JBrowse link
Q Ept18 Estrogen-induced pituitary tumorigenesis QTL 18 IDA RGD PMID:18420736 RGD:2292503 NCBI chr10:73,453,136...96,120,911 JBrowse link
Q Ept2 Estrogen-induced pituitary tumorigenesis QTL 2 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 3:47,233,430...110,362,260 JBrowse link
Q Ept5 Estrogen-induced pituitary tumorigenesis QTL 5 IDA RGD PMID:17876666 RGD:1642526 NCBI chr 4:83,428,419...177,635,233 JBrowse link
Q Ept6 Estrogen-induced pituitary tumorigenesis QTL 6 IDA RGD PMID:15687265 RGD:1334449 NCBI chr 3:6,537,645...10,778,823 JBrowse link
Q Ept7 Estrogen-induced pituitary tumorigenesis QTL 7 IDA RGD PMID:17876666 RGD:1642526 NCBI chr 7:62,004,452...101,773,158 JBrowse link
Q Ept9 Estrogen-induced pituitary tumorigenesis QTL 9 IDA RGD PMID:15687265 RGD:1334449 NCBI chr10:73,453,136...96,120,911 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  vertebrate trait 2384
    organ system trait 1553
      nervous/sensory system trait 117
        nervous system morphology trait 104
          brain morphology trait 40
            forebrain morphology trait 28
              basal ganglion morphology trait + 0
              diencephalon morphology trait + 20
              forebrain cell quantity 0
              limbic system morphology trait + 0
              telencephalon morphology trait + 8
paths to the root