Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:gastrointestinal system morphology trait
go back to main search page
Accession:VT:0000462 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color or pattern of the components of the system that converts ingested food to nutrients and energy.

show annotations for term's descendants           Sort by:
 
cecum mucosa thickness term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ginf1 Gastrointestinal inflammation QTL 1 IDA RGD PMID:19526527 RGD:2316974 NCBI chr 8:7,368,076...52,368,076 JBrowse link
intestine integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Colcr1 Colorectal carcinoma resistance QTL 1 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 4:1...26,654,881 JBrowse link
Q Colcr2 Colorectal carcinoma resistance QTL 2 IDA RGD PMID:17510081 RGD:1625309 NCBI chr15:2,327,877...26,288,802 JBrowse link
Q Colcr3 Colorectal carcinoma resistance QTL 3 IDA RGD PMID:17510081 RGD:1625309 NCBI chr18:2,477,096...23,184,414 JBrowse link
Q Colcr4 Colorectal carcinoma resistance QTL4 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 6:21,515,302...65,784,818 JBrowse link
Q Colcr5 Colorectal carcinoma resistance QTL 5 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 6:127,286,494...144,745,573 JBrowse link
Q Colcr6 Colorectal carcinoma resistance QTL 6 IDA RGD PMID:17510081 RGD:1625309 NCBI chr15:81,255,292...109,133,904 JBrowse link
Q Colcr7 Colorectal carcinoma resistance QTL 7 IDA RGD PMID:17510081 RGD:1625309 NCBI chr17:519,770...23,422,380 JBrowse link
Q Colcr8 Colorectal carcinoma resistance QTL 8 IDA RGD PMID:17510081 RGD:1625309 NCBI chr18:23,184,227...53,861,431 JBrowse link
Q Colcr9 Colorectal carcinoma resistance QTL 9 IDA RGD PMID:17510081 RGD:1625309 NCBI chr20:2,999,707...47,999,707 JBrowse link
Q Colcs1 Colorectal carcinoma susceptibility QTL 1 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 5:128,687,766...173,687,766 JBrowse link
Q Xhs1 X-ray hypersensitivity QTL 1 IDA RGD PMID:11003700 RGD:69702 NCBI chr 4:81,959,983...152,055,009 JBrowse link
Q Xhs2 X-ray hypersensitivity QTL 2 IDA RGD PMID:11003700 RGD:69702 NCBI chr 1:16,033,078...20,130,904 JBrowse link
Q Xhs3 X-ray hypersensitivity QTL 3 IDA RGD PMID:11381618 RGD:631318 NCBI chr 4:85,794,049...129,615,056 JBrowse link
stomach morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr1 Gastric cancer resistance QTL 1 IDA RGD PMID:10706129 RGD:69698 NCBI chr 4:119,705,414...146,087,100 JBrowse link
Q Gcr2 Gastric cancer resistance QTL 2 IDA RGD PMID:10706129 RGD:69698 NCBI chr 3:3,285,929...28,136,884 JBrowse link
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:19,398,187...70,590,230 JBrowse link
Q Gcs1 Gastric cancer susceptibility QTL1 IDA RGD PMID:10706129 RGD:69698 NCBI chr15:83,947,714...111,246,239 JBrowse link
tongue integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tcas1 Tongue tumor susceptibility QTL 1 IDA RGD PMID:9563479 RGD:61091 NCBI chr19:1,957,707...46,957,707 JBrowse link
Q Tcas10 Tongue tumor susceptibility QTL 10 IDA RGD PMID:11429048 RGD:634723 NCBI chr10:33,179,030...78,179,030 JBrowse link
Q Tcas11 Tongue tumor susceptibility QTL 11 IDA RGD PMID:16527513 RGD:1578522 NCBI chr 5:47,745,646...167,946,134 JBrowse link
Q Tcas2 Tongue tumor susceptibility QTL 2 IDA RGD PMID:11429048 RGD:634723 NCBI chr 1:210,019,247...217,054,418 JBrowse link
Q Tcas3 Tongue tumor susceptibility QTL 3 IDA RGD PMID:11429048 RGD:634723 NCBI chr 4:7,342,404...92,484,039 JBrowse link
Q Tcas4 Tongue tumor susceptibility QTL 4 IDA RGD PMID:11429048 RGD:634723 NCBI chr14:19,191,541...43,957,628 JBrowse link
Q Tcas5 Tongue tumor susceptibility QTL 5 IDA RGD PMID:11429048 RGD:634723 NCBI chr19:5,007,571...43,907,843 JBrowse link
Q Tcas6 Tongue tumor susceptibility QTL 6 IDA RGD PMID:11429048 RGD:634723 NCBI chr 1:95,304,961...156,446,783 JBrowse link
Q Tcas7 Tongue tumor susceptibility QTL 7 IDA RGD PMID:15876484 RGD:1358147 NCBI chr19:24,455,726...43,907,843 JBrowse link
Q Tcas8 Tongue tumor susceptibility QTL 8 IDA RGD PMID:11429048 RGD:634723
Q Tcas9 Tongue tumor susceptibility QTL 9 IDA RGD PMID:11429048 RGD:634723 NCBI chr 6:1...25,048,718 JBrowse link
Q Tcat1 Tongue tumor resistance QTL 1 IDA RGD PMID:9563479 RGD:61091 NCBI chr 1:111,446,783...156,446,783 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      alimentary system trait 80
        gastrointestinal system morphology trait 30
          anus morphology trait + 0
          crop morphology trait + 0
          digestive organ orientation trait + 0
          esophagus morphology trait + 0
          forestomach morphology trait + 0
          gizzard morphology trait + 0
          intestine morphology trait + 14
          proventriculus morphology trait + 0
          stomach morphology trait + 4
          tongue morphology trait + 12
paths to the root