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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:mineral amount
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Accession:VT:0000192 term browser browse the term
Definition:The proportion, quantity, or volume in a body tissue or fluid of any inorganic element or compound that has importance in body functions.


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liver copper amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IDA RGD PMID:11741328 RGD:619607
Q Hcuc2 Hepatic copper content QTL 2 IDA RGD PMID:11741328 RGD:619607 NCBI chr16:1...39,533,949 JBrowse link
Q Hcuc3 Hepatic copper content QTL 3 IDA RGD PMID:12094018 RGD:629572 NCBI chr 2:229,059,610...249,053,267 JBrowse link
Q Hcuc4 Hepatic copper content QTL 4 IDA RGD PMID:12094018 RGD:629572 NCBI chr10:66,941,813...73,452,992 JBrowse link
platelet calcium amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Calcic1 Intracellular calcium level QTL 1 IDA RGD PMID:15882549 RGD:1547855 NCBI chr12:28,064,433...40,130,419 JBrowse link
urine calcium amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hc1 Hypercalciuria QTL 1 IDA RGD PMID:12819244 RGD:631855 NCBI chr 1:178,810,256...240,830,002 JBrowse link
Q Hc2 Hypercalciuria QTL 2 IDA RGD PMID:12819244 RGD:631855 NCBI chr 4:210,796...45,210,796 JBrowse link
Q Hc3 Hypercalciuria QTL 3 IDA RGD PMID:12819244 RGD:631855 NCBI chr 7:42,787,314...87,787,314 JBrowse link
Q Hc4 Hypercalciuria QTL 4 IDA RGD PMID:12819244 RGD:631855 NCBI chr10:1...38,328,221 JBrowse link
Q Hc5 Hypercalciuria QTL 5 IDA RGD PMID:12819244 RGD:631855 NCBI chr14:58,184,885...103,184,885 JBrowse link
Q Hc6 Hypercalciuria QTL 6 IDA RGD PMID:16611718 RGD:1582396 NCBI chr 1:203,995,416...244,113,296 JBrowse link
urine mineral amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Uminl1 Urine mineral level QTL 1 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 3:28,249,687...73,249,687 JBrowse link
Q Uminl2 Urine mineral level QTL 2 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 6:38,783,989...83,783,989 JBrowse link
Q Uminl3 Urine mineral level QTL 3 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 8:71,888,757...116,888,757 JBrowse link
Q Uminl4 Urine mineral level QTL 4 IDA RGD PMID:25003539 RGD:8694157 NCBI chr14:55,624,247...100,624,247 JBrowse link
Q Uminl5 Urine mineral level QTL 5 IDA RGD PMID:25003539 RGD:8694157 NCBI chr19:1...36,824,771 JBrowse link
urine potassium amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf26 Renal function QTL 26 IDA RGD PMID:14532335 RGD:727992 NCBI chr18:52,539,863...65,844,950 JBrowse link
Q Rf28 Renal function QTL 28 IDA RGD PMID:11721057 RGD:70849 NCBI chr 1:45,803,140...78,430,678 JBrowse link
Q Rf29 Renal function QTL 29 IDA RGD PMID:11721057 RGD:70849 NCBI chr 1:35,239,598...78,430,678 JBrowse link
Q Rf30 Renal function QTL 30 IDA RGD PMID:11721057 RGD:70849 NCBI chr 3:39,454,637...89,115,240 JBrowse link
Q Rf31 Renal function QTL 31 IDA RGD PMID:11721057 RGD:70849 NCBI chr 4:39,524,264...74,726,312 JBrowse link
urine sodium amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf27 Renal function QTL 27 IDA RGD PMID:11721057 RGD:70849 NCBI chr 1:28,879,780...78,430,678 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2888
    organism trait 1150
      homeostasis trait 694
        molecule homeostasis trait 362
          mineral homeostasis trait 35
            mineral amount 35
              blood mineral amount + 3
              calcium amount + 13
              cerebrospinal fluid mineral amount 0
              copper amount + 7
              iron amount + 0
              milk mineral amount + 0
              muscle mineral amount + 0
              selenium amount + 0
              skin mineral amount + 0
              urine mineral amount + 25
paths to the root